PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T054600.1 | ||||||||
Common Name | POPTR_0012s02030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13398.8 Da PI: 11.18 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2e-15 | 4 | 87 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+l s + ++rl++p kf+++ +g ++ + +de g+ W +++++ r++ + vlt+GWkeF ++++Lk+gD v F Potri.T054600.1 4 FSKIL--SKTDIKKRLTVPIKFLKSLpsfDGGHAL--KFEARDEGGEAWAFQCSVrRRGHPKPVLTRGWKEFINSKKLKTGDKVSFIK 87 66777..55555678********999*98444445..68888***********8844444459**********************973 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.292 | 2 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.94E-16 | 3 | 85 | No hit | No description |
Pfam | PF02362 | 1.1E-12 | 4 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-18 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-8 | 4 | 112 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.18E-13 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MARFSKILSK TDIKKRLTVP IKFLKSLPSF DGGHALKFEA RDEGGEAWAF QCSVRRRGHP 60 KPVLTRGWKE FINSKKLKTG DKVSFIKCKN RATAKTSYRV RAEKEIKIFG AIIGYAPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 77 | RRRGHPKPVLTRGWKEFINSKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T054600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012049.1 | 2e-77 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | U5FTR4 | 3e-80 | U5FTR4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02030.1 | 5e-81 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35520.1 | 2e-09 | auxin response factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T054600.1 |
Entrez Gene | 18103643 |