 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.T024300.1 |
| Common Name | POPTR_0011s12790g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NZZ/SPL |
| Protein Properties |
Length: 324aa MW: 35441.5 Da PI: 8.3542 |
| Description |
NZZ/SPL family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.T024300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NOZZLE | 24 | 6.8e-08 | 6 | 215 | 4 | 177 |
NOZZLE 4 slffmstdqnsvrnpnellrntrlvvnssgeirtetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatv..gd.....ts 90
slf+m ++n + + + t+ + r t + ++p + + q +kk rgmgva+le +i+e k ++ a++ g t
Potri.T024300.1 6 SLFLMPNNDNKQEPTQTMAISTKP----AEPARRSTATNQSKRPTTSKC-QTRKKQCQRGMGVAQLESLRIQERWKAITEANQniGAlnlqpTQ 94
566666655554333333333333....334555666667777876655.55677789***************999996654411431111122 PP
NOZZLE 91 sv.......aai..sntatrlpvpvdrgvvlqgfps.......................slgssrilcggvgsgqvmidpvis...pwgfvets 149
+ + +n+ ++ v+rgv g + g gsgqv+++p + p v +
Potri.T024300.1 95 QLhdhypsnYNTdnNNQMLQYGTTVNRGVP-----MssnggvfngflgwdhqggvvvkrVDGFNVNNNDGFGSGQVFVNPYLVgsvPVHQVGAP 183
111111000111002222334444555543.....24455566777779988877777433447777889999999999965312355555554 PP
NOZZLE 150 a....tthelssisnpqmynassnnrcdtcfk 177
a +++elssi++ ++ rcd cfk
Potri.T024300.1 184 ApvfeASKELSSIPKVMQHQQYEPSRCDLCFK 215
422224679******9999999999******9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MATPLSLFLM PNNDNKQEPT QTMAISTKPA EPARRSTATN QSKRPTTSKC QTRKKQCQRG 60
MGVAQLESLR IQERWKAITE ANQNIGALNL QPTQQLHDHY PSNYNTDNNN QMLQYGTTVN 120
RGVPMSSNGG VFNGFLGWDH QGGVVVKRVD GFNVNNNDGF GSGQVFVNPY LVGSVPVHQV 180
GAPAPVFEAS KELSSIPKVM QHQQYEPSRC DLCFKMGGFS ARAARSAPYA NHNHNNNEGT 240
SEVMAVHRKG NNPLGRNVIM EYEFFPGKNG ENTCFKEMEF PPPEASVAVG TGEAFCVTTY 300
SDYSGYSASN ASNSIDLSLK LSY*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216449 | 0.0 | AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence. |
