PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.019G130000.1 | ||||||||
Common Name | POPTR_0019s15040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 387aa MW: 41818.3 Da PI: 6.4455 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.4 | 8.5e-10 | 188 | 244 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s Potri.019G130000.1 188 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 244 9****************************************9998877666655555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.5E-16 | 184 | 248 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.611 | 186 | 249 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-10 | 188 | 239 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-8 | 188 | 243 | No hit | No description |
Pfam | PF00170 | 1.0E-8 | 188 | 245 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 7.92E-23 | 189 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 387 aa Download sequence Send to blast |
MSSSMETQDP QSKPPQNSDP TKPHNPNPTT PPASSMLNNI RGGALHRRAR SEMSFRLPED 60 MTMMMMDIHP SDQINGGNGN GNGNGGGGSS TGSLEEIGSE DDLFSTYIDV DKLTGGNSGN 120 GAGGGVQNDN DNNMNGEKAG VSGSGTSRPK HRHSNSVDGS VFGGGEVMDA KKAMPPDKLA 180 ELWNIDPKRA KRILANRQSA ARSKERKARY ILELERKVQT LQTEATTLSA QLTLFQRDTT 240 GLSSENTELK LRLQAMEQQA QLRDALNEAL KKEVERLRIA TGEMVSPSES FNLGMHQMPF 300 TQPNFFPLPP QPGSSGHPNM QLPSFTHTPP SMSTHHLQQA DSHNLSDYMQ NDPIRQLQGL 360 DISNKGLNIV KSEGPSLSAS ENSSTF* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.019G130000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC214418 | 1e-135 | AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446725.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-102 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A2K1WTC9 | 0.0 | A0A2K1WTC9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s15040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40620.1 | 4e-98 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.019G130000.1 |
Entrez Gene | 7498123 |
Publications ? help Back to Top | |||
---|---|---|---|
|