PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G141500.1
Common NamePOPTR_0018s13830g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 275aa    MW: 31688.1 Da    PI: 6.2759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G141500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-155499555
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +   Er+RR+++N+++ eLr+ +Pk +      Kl+Ka++ + A++YI++Lq
  Potri.018G141500.1 54 NTVSERNRRKKLNDKLLELRQAVPKiS------KLDKASTIKDAIDYIQDLQ 99
                        5678*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.914998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.66E-1252102No hitNo description
SuperFamilySSF474593.14E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-125499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1755117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MESFEDISEY QNYWEMTSMF LNDELKSWAM DQASSHYYDS SSPDEAASAI ASKNTVSERN  60
RRKKLNDKLL ELRQAVPKIS KLDKASTIKD AIDYIQDLQE QETRLQAEIM ELESERSEKD  120
KGYEFERELP VLLTSKKTRY DHISDHREPR SDPIEVHQLR VSSMGEKTLF VSLTCSQARE  180
AMVKICEVFE SLKLKIITAS VTSVSGMFKK TILIEVRLFF PPRLSIISLQ GTEMLSNKKW  240
LPKIHADVEE RDHLKSRIER AIKALSGPYN PQSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.63920.0catkin| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G141500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445130.0EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324688.11e-172transcription factor bHLH35 isoform X1
TrEMBLB9IN641e-170B9IN64_POPTR; BHLH family protein
STRINGPOPTR_0018s13830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.26e-66bHLH family protein