PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G066300.3 | ||||||||
Common Name | POPTR_0018s07040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 280aa MW: 30638.6 Da PI: 9.6549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.1e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++W eE+e l +++++G+g Wk I r R+ ++k++w++ Potri.018G066300.3 5 KQKWKSEEEEALRAGIAKHGTGKWKNIQRDPEfnpylRSRSNIDLKDKWRNM 56 79************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.711 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.41E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-13 | 4 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.42E-19 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 7.62E-17 | 114 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.2E-16 | 114 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 6.4E-21 | 115 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 24.959 | 117 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 1.9E-11 | 119 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGNPKQKWKS EEEEALRAGI AKHGTGKWKN IQRDPEFNPY LRSRSNIDLK DKWRNMTVSA 60 GSQSVKDKSR TLKAKSSPDA AAVVAASTPL SNPHTSAVAA VDVVIDDSSE AAADSKTAPK 120 YNAMIFEAIS ALNEPNGADT SAIISYIERR QELPQNFRRQ LSSRLRRLVA QEKLEKVQNF 180 YKIKKASSFG TKTPTPKQKE VRPKPEQNTG LINSGDTVAE AADDAAYMVA EAENKSFVAT 240 EAVKESERVS KMAEDANSLL QLANEILEKC LRGEIVVMG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G066300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371994.1 | 0.0 | telomere repeat-binding factor 4 | ||||
Refseq | XP_024445699.1 | 0.0 | telomere repeat-binding factor 4 | ||||
Swissprot | F4IEY4 | 6e-74 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | B9N5F4 | 0.0 | B9N5F4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07040.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 4e-59 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G066300.3 |
Entrez Gene | 18107693 |
Publications ? help Back to Top | |||
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