PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G099900.1
Common NamePOPTR_0016s10610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 310aa    MW: 34688.3 Da    PI: 6.1084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G099900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31118174258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          Dgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h
  Potri.016G099900.1 118 GDGYKWRKYGQKSIKNSTHPRSYYRCTNRRCGAKKQVERSSEDPDTLVITYEGLHLH 174
                         5******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28110174IPR003657WRKY domain
PROSITE profilePS5081125.993112177IPR003657WRKY domain
SuperFamilySSF1182902.75E-26113174IPR003657WRKY domain
SMARTSM007745.3E-34117176IPR003657WRKY domain
PfamPF031062.2E-25119174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEGEVISSSW FSESEEDELV RELLDDVSPF FFLPEERNQS KAASPTPRNE EAMNQLISKV  60
YSGPTKQDIE NALSMTSRRD QPQPVSQARF SLLQKGLSKI ENNKYTVKLK SCDNGVAGDG  120
YKWRKYGQKS IKNSTHPRSY YRCTNRRCGA KKQVERSSED PDTLVITYEG LHLHFSHPYF  180
LSNQPQHVDP PSKKPKRTIS EDEFQAHETR QPPEQGQECS THVTSPGSLP SSSTADDYMQ  240
ESDLEAMGPR GLLEDVVPFM IRNPSNYNVS SYSSSSSYRS PPTSPSSSLS WSPILSHSCF  300
DVGLNTSIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-181191741974Probable WRKY transcription factor 4
2ayd_A2e-181161741371WRKY transcription factor 1
2lex_A2e-181191741974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G099900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179300.0JN117930.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323509.10.0probable WRKY transcription factor 49
TrEMBLB9IFV90.0B9IFV9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-45WRKY DNA-binding protein 49