PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G085000.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 125aa MW: 13869.8 Da PI: 9.7637 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 76.3 | 4.6e-24 | 25 | 71 | 49 | 95 |
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +sdkcqrekrktingddllwa+atlGfedy++plk+yl++yre ++ Potri.016G085000.4 25 ATSDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDT 71 579****************************************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.07E-17 | 6 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-4 | 22 | 47 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.2E-20 | 22 | 82 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 2.2E-10 | 30 | 48 | No hit | No description |
PRINTS | PR00615 | 2.2E-10 | 49 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MERLLRMLKR LFKNVFLSSL ALSLATSDKC QREKRKTING DDLLWAMATL GFEDYIDPLK 60 IYLSRYREGD TKGSAKTGDT SAKKDIHPGP NAQISHQGSF SQGVSYGNSN SQAPHMMVPM 120 QSNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 9e-17 | 26 | 68 | 50 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 9e-17 | 26 | 68 | 50 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G085000.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322853.1 | 5e-68 | nuclear transcription factor Y subunit B-10 isoform X2 | ||||
Swissprot | Q67XJ2 | 5e-40 | NFYBA_ARATH; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | B9IIZ5 | 1e-66 | B9IIZ5_POPTR; Uncharacterized protein | ||||
STRING | XP_006480596.1 | 5e-54 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 2e-41 | nuclear factor Y, subunit B10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G085000.4 |
Publications ? help Back to Top | |||
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