PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G036500.1
Common NamePOPTR_0016s03590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 464aa    MW: 51095 Da    PI: 7.0931
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G036500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10178218545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Potri.016G036500.1 178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 218
                         788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-8174237IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415176220IPR004827Basic-leucine zipper domain
CDDcd147081.54E-21178230No hitNo description
SuperFamilySSF579596.88E-7178221No hitNo description
PfamPF001702.8E-7178218IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7179222No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF141445.0E-32260335IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGSRTHNNNK AVTEMPSFVP QISTSNPIGT EGNNIRSSRV SDFSTIEQSL GFRIEDAVDL  60
SRNPLFHQLK SSGQAIGTDV QFGTLNKPLA SSDINLSAAV VGSQSLPLQK EVQVNPVSIP  120
GNHPENWGET SMAEASPRTD TSTDDTDDKN QRFERGQSTA IVASDSSDKS KEKAGDQKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISS SGDQTHSMSG  240
NGALAFDAEY SRWLEEQNRH ISELRAAVNS HAGDTELHTI VDNVVAHFNE VYRLKGTAAK  300
ADVFHILSGM WKTPAERCFM WIGGFRSSEL LKLLVNQLEP LTEQQLMGIY NLQQSSQQAE  360
DALSQGMEAL QQSLAETLAN GNPGSSGSSG NVANYMGQMA MAMGKLGTLE GFLRQADNLR  420
QQTLEQMHRI LTTRQSARAL LAINDYFSRL RALSSLWLAR PQE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.2080.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G036500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1951200.0EF195120.1 Populus tremula x Populus alba TGA transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323247.10.0transcription factor TGA2.3 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLB9IHR10.0B9IHR1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s03590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-143bZIP family protein