PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G035400.1 | ||||||||
Common Name | POPTR_0016s03460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27187 Da PI: 8.4774 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 71 | 117 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr ll + K +Ka+ L k+v+ +++L Potri.016G035400.1 71 KNHKEAEKRRRERINSHLDKLRGLLLCN-----SKTDKASLLAKVVQRVREL 117 58*************************8.....7************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.367 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.81E-10 | 71 | 120 | No hit | No description |
Pfam | PF00010 | 7.4E-9 | 71 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 72 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-13 | 72 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-10 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQPENCSENS QLYRFLAENG MINVGAYGFP GAAMQTLCTS SSTSYHNNNY QFESSVITDM 60 TPQDRALAAL KNHKEAEKRR RERINSHLDK LRGLLLCNSK TDKASLLAKV VQRVRELKQQ 120 TSELSGLETF PSETDEVTVL SGEYSSDGQL IFKASLCCED RLDLMPELNE ILKSLHLKTL 180 KAEMVTLGGR IRNVLIIAAD KDHSVESVHF LQNALKSLLE RSNSSEKSKR RRILDRKLVI 240 Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 232 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13134 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G035400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144804 | 0.0 | EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322615.2 | 1e-178 | transcription factor bHLH106 | ||||
Swissprot | O80674 | 5e-82 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A9P9G7 | 1e-177 | A9P9G7_POPTR; BHLH family protein | ||||
STRING | POPTR_0016s03460.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 8e-78 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G035400.1 |
Entrez Gene | 7458917 |
Publications ? help Back to Top | |||
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