PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G005600.1 | ||||||||
Common Name | POPTR_0016s00740g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 232aa MW: 25995.9 Da PI: 6.9653 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.1 | 6e-54 | 46 | 142 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdrf+Pianv+rim+k+lP ++kis+daket+qecvsefisf+tsea+++cqre+rkti+++d+l+a+++lGf+dy+epl++yl++yr Potri.016G005600.1 46 VREQDRFMPIANVIRIMRKMLPPHGKISDDAKETIQECVSEFISFITSEANERCQREQRKTITAEDVLYAMSKLGFDDYIEPLTIYLHRYR 136 69***************************************************************************************** PP NF-YB 92 elegek 97 elege+ Potri.016G005600.1 137 ELEGER 142 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.2E-52 | 42 | 160 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.35E-40 | 49 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-26 | 52 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.8E-17 | 80 | 98 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 83 | 99 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.8E-17 | 99 | 117 | No hit | No description |
PRINTS | PR00615 | 1.8E-17 | 118 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDRGGFHGYR KHANTSSEIN MRLAEINHST TNKFHTTTDD ISECTVREQD RFMPIANVIR 60 IMRKMLPPHG KISDDAKETI QECVSEFISF ITSEANERCQ REQRKTITAE DVLYAMSKLG 120 FDDYIEPLTI YLHRYRELEG ERGSMRGEPL MKTRNSNNNN NVDQYGTLMA GAGAAYAPAF 180 HVSHHHHPHH HGFFGGAPIG AGYMTMRDAN SNASSSHSAA LANVEAFAQH Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-59 | 42 | 137 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G005600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210129 | 0.0 | AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442979.1 | 1e-126 | nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 2e-73 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | B9IH12 | 1e-174 | B9IH12_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s00740.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 2e-72 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G005600.1 |
Entrez Gene | 7474076 |