PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G006200.1
Common NamePOPTR_0015s00860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 448aa    MW: 48498.9 Da    PI: 8.2286
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G006200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.1e-2494136244
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          epgrCrRtDGKkWRCsr+v ++kk+CErH+hrgr rsrk++e
  Potri.015G006200.1  94 LEPGRCRRTDGKKWRCSRDVAPDKKYCERHMHRGRPRSRKHVE 136
                         69***************************************97 PP
2QLQ49.31.4e-174476234
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                        +FT+aQ+++L++Q+++yKy++++  vPp+Ll +
  Potri.015G006200.1 44 PFTNAQWNELERQAMIYKYMVSSNHVPPHLLIP 76
                        8*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-114379IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.5854479IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-124476IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.5593137IPR014977WRC domain
PfamPF088794.0E-2095136IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
SVGACGGAVG VRTLQPFDTS ESIITTASAF KSPGGNMAAS LGFPFTNAQW NELERQAMIY  60
KYMVSSNHVP PHLLIPTPLM GNGLDVRFTK RADLEPGRCR RTDGKKWRCS RDVAPDKKYC  120
ERHMHRGRPR SRKHVELNTS SNSNSNKKSR HNPSICTESP VTVAISNPTI NNNNSSSASH  180
DHFVGTMPQP YIQTPVFVNK TSEKIATFDA NGAFGSTYKE PRSFDWMLKG GTGPIVTNDQ  240
QWPHLVHTEI GLATEGSFNN ASVLKQHYRE ESLNLNSYGN LNAREDQHRS QYSLFLDGAP  300
RSYIDAWSND ANSGNTSSVS SDGKLPLSPL SLSMGGNRSV DDEMGQIQMG LGLIKPDQNQ  360
ECGGDTSSTP GGPLAEVLQL RTVNINTGTN QSSSVIENGD SICPPATRVS SPSEVLQKTH  420
ASLSDSSGNR VQHLPVQGPN LKLPCFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G006200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321965.20.0growth-regulating factor 4
TrEMBLA0A3N7G3550.0A0A3N7G355_POPTR; Uncharacterized protein
STRINGPOPTR_0015s00860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73242842
Representative plantOGRP1109257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.18e-36growth-regulating factor 7