|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.014G164400.1 |
Common Name | POPTR_0014s16230g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
GRAS |
Protein Properties |
Length: 548aa MW: 60759.8 Da PI: 6.1613 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G164400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 454.1 | 8.7e-139 | 177 | 547 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+++L++cA+avs++dl +aq l+ +l++++s +g+p+qRl ay++e+L arla+s+s+++k l+++e + s+e l+++++++ev+ ++
Potri.014G164400.1 177 LKQVLIACAKAVSDNDLLMAQCLMDKLRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSICKGLRCKEPA---SAEMLSYMHILYEVCAYF 264
5799*****************************************************************9...9***************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+Ae+++vpfef++
Potri.014G164400.1 265 KFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWISLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLSIVGKRLSKLAESFKVPFEFHA 355
**********************************************************998899999************************ PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
+a + ++++e+L v++gEalaVn+++ lh+++desvs++++rd+vL+lvks+sPkvv++veqe+++n++ F+ rf+e+l+yy+a+f+s+
Potri.014G164400.1 356 -AAMSGCEVQIENLGVRRGEALAVNFAFVLHHMPDESVSTQNHRDRVLRLVKSMSPKVVTLVEQESNTNTAAFFPRFIETLNYYTAMFESI 445
.89999************************************************************************************* PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
+++lpr+++eri+vE+++l+r++vn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll++++++ yr++e++g+l+lgW
Potri.014G164400.1 446 DVTLPRDHKERINVEQHCLARDVVNIIACEGTERVERHELLGKWRSRFTMAGFTPYPLSTLVNATIKTLLENYSDR-YRLQERDGALYLGW 535
**************************************************************************66.************** PP
GRAS 363 kdrpLvsvSaWr 374
++r Lv+ +aW+
Potri.014G164400.1 536 MNRDLVASCAWK 547
***********8 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007165 | Biological Process | signal transduction |
GO:0009640 | Biological Process | photomorphogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0004871 | Molecular Function | signal transducer activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MQASKQLRGS GMSSRFLYQP MQEVEAYCKP QSRTLDRQIY SSGSTQGTPF TIPNSHEQYC 60 TLESSSANGS YAAYNSPSTV SFSPNGSPLS QQESQSYSLE PRHSPDNASG SPLSGSCITD 120 DAHDFSHKLR ELETVMFGPD SDIIDSIENA LESGTNIESL EMDSWRQIMD VISRGDLKQV 180 LIACAKAVSD NDLLMAQCLM DKLRQMVSVS GEPIQRLGAY MLEGLVARLA SSGSSICKGL 240 RCKEPASAEM LSYMHILYEV CAYFKFGYMS ANGAIAEAMK DENRVHIIDF QIGQGSQWIS 300 LIQAFAARPG GPPHIRITGI DDSTSAYARG GGLSIVGKRL SKLAESFKVP FEFHAAAMSG 360 CEVQIENLGV RRGEALAVNF AFVLHHMPDE SVSTQNHRDR VLRLVKSMSP KVVTLVEQES 420 NTNTAAFFPR FIETLNYYTA MFESIDVTLP RDHKERINVE QHCLARDVVN IIACEGTERV 480 ERHELLGKWR SRFTMAGFTP YPLSTLVNAT IKTLLENYSD RYRLQERDGA LYLGWMNRDL 540 VASCAWK*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |