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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.014G104800.1 |
Common Name | POPTR_0014s10060g, PtVNS09, WND2A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
NAC |
Protein Properties |
Length: 383aa MW: 43782.8 Da PI: 6.4363 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G104800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 168.6 | 2.1e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++++k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+
Potri.014G104800.1 15 VPPGFRFHPTEEELLHYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQERCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 104
69****************************.9***************964444122455******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk ++s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl
Potri.014G104800.1 105 DKVIYS-TGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143
******.9999***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MTENMSISVN GQSQVPPGFR FHPTEEELLH YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QERCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS TGKRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDSTSDT NVSNVMEEEA AQEEGWVVCR IFKKKNLNKT 180 LDKPFSSSPI SADTRNQMLS SCDEGTIDQT FHYMGRTCKE ENVADNSATA RYLRPVDTAI 240 NYVHHDGFMK LPSLESPNSI SSQNCYQPMI TDNEGSITNQ MSYPLDPGLD NWATLDRLFA 300 YQLNGQTETS RQLPCIDPTI TYCTPSTDLH HDLRLPTLRS SFPLPSNRSY HGTQDYNNEI 360 DLWNFTTRSS PDTLCQLSNT GA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Function -- GeneRIF ? help
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- Authors overexpressed Secondary Wall-Associated NAC Domain 1s (Ptr-SND1-B1), a TF gene affecting wood formation, in stem differentiating xylem protoplasts and identified differentially expressed genes by RNA sequencing. [SND1]
[PMID: 24280390]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB599940 | 0.0 | AB599940.1 Populus trichocarpa PtVNS09 mRNA for transcription factor, complete cds. |
GenBank | HQ215849 | 0.0 | HQ215849.1 Populus trichocarpa wood-associated NAC domain transcription factor 2A (WND2A) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Zhong R,Lee C,Ye ZH
Functional characterization of poplar wood-associated NAC domain transcription factors. Plant Physiol., 2010. 152(2): p. 1044-55 [PMID:19965968] - Ohtani M, et al.
A NAC domain protein family contributing to the regulation of wood formation in poplar. Plant J., 2011. 67(3): p. 499-512 [PMID:21649762] - Lin YC, et al.
SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa. Plant Cell, 2013. 25(11): p. 4324-41 [PMID:24280390] - Zhao Y,Sun J,Xu P,Zhang R,Li L
Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Plant Physiol., 2014. 164(2): p. 765-76 [PMID:24394777] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]
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