PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G066100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 392aa    MW: 44033.8 Da    PI: 5.5425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G066100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C ksFs+   L  H+r+H
  Potri.014G066100.1  4 HKCKLCFKSFSNGRALGGHMRSH 26
                        79********************9 PP
2zf-C2H214.10.00014246268123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Potri.014G066100.1 246 YKCETCNKVFKSYQALGGHRASH 268
                         9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-5330No hitNo description
PfamPF139126.0E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762431IPR007087Zinc finger, C2H2
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-7246268No hitNo description
PROSITE profilePS5015710.492246273IPR007087Zinc finger, C2H2
PfamPF139123.0E-11246270IPR007087Zinc finger, C2H2
SMARTSM003550.01246268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-7295322No hitNo description
PROSITE profilePS501578.621300322IPR007087Zinc finger, C2H2
PfamPF139129.8E-10300322IPR007087Zinc finger, C2H2
SMARTSM003551.6300322IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEKHKCKLCF KSFSNGRALG GHMRSHLLKL PVPPKLEDQF PHIEVSEDTE SISSSEEEAE  60
EGQGEEEEEE EEEEEEKGVL YGLRENPKRS IRLVDPEFCF AAADAGSVVL QDRESETESS  120
KNPTRRRSKR TERLLENHHH QYHQQRPRQE QENNNIVKKL ELKKMGTFKA AAESSSGQEP  180
EPVSSISDTT TEEDVAFCLM MLSRDRWKRK EQENQEEDRG LEEEVETETD DSGEFKSCKT  240
KVRGKYKCET CNKVFKSYQA LGGHRASHKK LKVYTPSKEP NLEPTENAGA STSLPEKKIH  300
GCPFCLRVFS SGQALGGHKR SHVIGVAASS STPARSSTKF GDNNLGLIDL NLPAPVDDDD  360
ISQADKLSAV SDAEFVSYIK RSAKLFQRGW D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G066100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440190.10.0zinc finger protein ZAT9 isoform X2
TrEMBLA0A2I4KKY00.0A0A2I4KKY0_POPTR; C2H2 family protein
STRINGPOPTR_0014s06150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-54C2H2-like zinc finger protein