PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G117600.1
Common NamePOPTR_0013s12190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 269aa    MW: 29325.7 Da    PI: 8.2168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G117600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-1374120354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h+e+Er+RR+riN  +++Lr+l+P        K++Ka+ L +++ ++k+L
  Potri.013G117600.1  74 RNHSEAERKRRARINAHLDTLRSLVPGT-----SKMDKASLLAEVISHLKEL 120
                         58*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.84471120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1474124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-1274123No hitNo description
PfamPF000104.5E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1374121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEPCSWNSAR VQAYACEGMS DVFLVNSRLQ AETRNGSRST SSLVLDNERG ELVEATVRME  60
RKGVSAEKSI AALRNHSEAE RKRRARINAH LDTLRSLVPG TSKMDKASLL AEVISHLKEL  120
KIQAAGAGEG LLMPLDIDEV RVEQEEDGLC SAPCLIRASI CCDYKPEILS GLRQALDALH  180
LMITRAEIAT LEGRMMNVLV MSSCKEGLGG DSKVRQFLAG SVHKAFRSVL EKFSASQEFS  240
LKPTLSNKRR RVGLLQPFSS SSSGDLCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.19280.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G117600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167661e-100AC216766.1 Populus trichocarpa clone POP029-O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376342.10.0transcription factor bHLH30
TrEMBLB9MW370.0B9MW37_POPTR; Uncharacterized protein
STRINGPOPTR_0013s12190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-31bHLH family protein