PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G107600.1 | ||||||||
Common Name | POPTR_0013s11210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18462.3 Da PI: 8.066 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.6 | 5e-16 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+vtf kR++g+lKK EL +LC++ ++ iifs Potri.013G107600.1 10 LISNESARKVTFRKRKAGLLKKLDELATLCGVIACAIIFSA 50 59*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.06E-20 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.787 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.70E-21 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 4.4E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-17 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGRRKVKHEL ISNESARKVT FRKRKAGLLK KLDELATLCG VIACAIIFSA YDDQPEIWPS 60 PAEALFAFEE LKRLPSRKPG KYMVDQEAFL STNVSKLNQQ LEKQRRKNLG LELELMMAGC 120 KEGMDLHDLK RIKNPSESIQ FLEEMIASVT SEIEHAENEN NA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVKHELISNESARKVTFRKRK |
2 | 101 | 107 | EKQRRKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G107600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006376234.1 | 1e-117 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | B9MWC8 | 1e-115 | B9MWC8_POPTR; M-type family protein | ||||
STRING | POPTR_0013s11210.1 | 1e-116 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14464 | 11 | 15 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 3e-35 | AGAMOUS-like 87 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G107600.1 |
Entrez Gene | 18104407 |