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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.013G054000.1 |
Common Name | POPTR_0013s05080g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
NAC |
Protein Properties |
Length: 369aa MW: 41603.9 Da PI: 8.5618 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.013G054000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.8 | 2.1e-53 | 8 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
Potri.013G054000.1 8 LPPGFRFHPTDEELILHYLKKKLASTPFPV-SIIADVDIYKFDPWDLPAKASLGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKI 97
79****************************.89***************999999************************************* PP
NAM 92 vlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ ++e++g+kk Lvfykg+ pkg+kt+W+mheyrl
Potri.013G054000.1 98 IMAStmapggvvgGQENIGVKKALVFYKGKPPKGVKTNWIMHEYRL 143
***99999988887888***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MKNPQSSLPP GFRFHPTDEE LILHYLKKKL ASTPFPVSII ADVDIYKFDP WDLPAKASLG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKIIMA STMAPGGVVG GQENIGVKKA 120 LVFYKGKPPK GVKTNWIMHE YRLADNPACN NNKKSMKPKD SSMRLDDWVL CRIYKKSHAL 180 TSSPRALISS EHDQEEEEEQ QQQQQFVQET LLPISNKNNL MSQKSCSFSN LFDAMDYSMW 240 SSFLADTPFN PTGFESNPTL NSTATQLDQP FFSNSNSASN SNSTSSGSFL QKLPQLNTSM 300 PNMQENKLKR QLPHIDEDLL HPSKKFMNSC SFTNTNNNTQ TDMGQYNFVS QPFLDQQLLL 360 SPHLQFLG*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-72 | 5 | 176 | 14 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-72 | 5 | 176 | 14 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC216771 | 0.0 | AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence. |