PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G001300.1 | ||||||||
Common Name | POPTR_0013s00310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 720aa MW: 77620.8 Da PI: 5.7494 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 455 | 501 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Potri.013G001300.1 455 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 501 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.26E-20 | 448 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 451 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.59E-17 | 454 | 505 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-20 | 455 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-13 | 455 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 457 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MPLSELLYRM AKGKTDSSQE KNPACSTDLS FVPENDFGEL IWENGQIQYS RARKIQTCNS 60 LPPKIRDKDI GNGTNTKTGK FGTMESTLNE LLAVPAVEVR ANQDDDMVPW LNYPLDEPLQ 120 HDYCSDFLPE LSGVTVNEHS SQSNFPSFDK RSCNQSITDS HTVSVHNGLN LEQGDVVMNS 180 SAGDIDAKRP RTSASQLYPS SSEQCKTSFP FFRSRDSTKK DDSTSNAVHH VIAPDSIRAP 240 TSGGGFPSIK MQKQVPAPSP INSSLINFSH FARPAALVKA NLQNVGMRAS SGTSSMERMQ 300 NKDKGSIGLP KETDSHCRPN MMSSKVEVKP TEVKPAEGSV PAELPEEMSQ EGDSKSDRNC 360 HQNFGESAIK GLEDVEKTTE PLVASSSVGS GNSAERPSDD PTENLKRKHR DTEESEGPSE 420 EIIYVQDAEE ESVGAKKPAS ARAGNGSKRG RAAEVHNLSE RRRRDRINEK MRALQELIPN 480 CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGMYMPSMML PPGMPHMHAA HMGQFLPMGV 540 GMGMGFRMGM PDMNGGYSGC PMYQVPPMHG AHFPGSQMSG PSALHGMGGP SLQMFGLSGQ 600 GLPMSFPRAP LMPMSGGPPP KTNREPNACG VVGPMDNLDS ATASSSKDAI QNINSQVMQN 660 NVANRSMNQT SSQCQATNEC FEQPAFAQNN GEGSEVAESG VLKSAGGTDI TPSRATGCD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 459 | 464 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G001300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214596 | 0.0 | AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438996.1 | 0.0 | transcription factor PIF3 isoform X2 | ||||
TrEMBL | B9I6B9 | 0.0 | B9I6B9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s00310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-66 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G001300.1 |
Entrez Gene | 7478869 |