PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G131100.1 | ||||||||
Common Name | POPTR_0011s13460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 578aa MW: 64558.9 Da PI: 6.2388 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 424.1 | 1.1e-129 | 207 | 576 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+a+++++ + ++l+++ + +s +g+p+qRl ay++e+L ar +s++++y+al+++e + ++ l+++++++e++P+l Potri.011G131100.1 207 LKQLLIACAKALAENKVNDFDKLIEKARSVVSISGEPIQRLGAYLVEGLVARKESSGTNIYRALRCKEPE---GKDLLSYMHTLYEICPYL 294 689******************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf++++aN aI ea +e+++Hi+Df i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + l ++++rL+ + e++++p+ef+ Potri.011G131100.1 295 KFGYMAANGAIAEACRNEDHIHIVDFHIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLDAVARRLTAISEKFNIPIEFHG 385 ***********************************************************999999************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 v d++ e+++v+pgEalaVn+ l+lh+++desv+++++rd +L+++ksl+Pkvv++veqe+++n+++Fl+rf+e+l+yy a+f+s+ Potri.011G131100.1 386 -VPVYAPDVTKEMFDVRPGEALAVNFPLELHHTPDESVDVNNPRDGLLRMIKSLNPKVVTLVEQESNTNTTPFLTRFVETLNYYLAMFESI 475 .688999************************************************************************************ PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++ lpr+++eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++r+++aGF++ pls+++++ +++llr ++ + y++ e +g+++lgW Potri.011G131100.1 476 DVRLPRNQKERISVEQHCLARDIVNVIACEGKEREERHELFGKWKSRFMMAGFRQCPLSSYVNSVIRSLLRCYS-EHYTLVEIDGAMLLGW 565 **********************************************************************9999.66************** PP GRAS 363 kdrpLvsvSaW 373 kdr+L+s+SaW Potri.011G131100.1 566 KDRNLISASAW 576 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.144 | 181 | 558 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-127 | 207 | 576 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MESHQYFGYG VTGAGLSYSS SYPSVPSMPN RLFGSLKLDI GNSTSSPFST EFDCDTYATT 60 LCDSQDRYSS TENLSGESSS YFSRLNPSVD CQRESLLLFP GGTSLLQDAS SSHNIKHTLL 120 KLETTLMGPD DDEDVNTPNT CLGGSSRPPT SDQKPRAWSQ QREGSHVIQT QTSFVSRQRQ 180 FGEGAHVEKR QKEMEEVHFH GIPSGDLKQL LIACAKALAE NKVNDFDKLI EKARSVVSIS 240 GEPIQRLGAY LVEGLVARKE SSGTNIYRAL RCKEPEGKDL LSYMHTLYEI CPYLKFGYMA 300 ANGAIAEACR NEDHIHIVDF HIAQGTQWMT LLQALAARPG GAPHVRITGI DDPVSKYARG 360 DGLDAVARRL TAISEKFNIP IEFHGVPVYA PDVTKEMFDV RPGEALAVNF PLELHHTPDE 420 SVDVNNPRDG LLRMIKSLNP KVVTLVEQES NTNTTPFLTR FVETLNYYLA MFESIDVRLP 480 RNQKERISVE QHCLARDIVN VIACEGKERE ERHELFGKWK SRFMMAGFRQ CPLSSYVNSV 540 IRSLLRCYSE HYTLVEIDGA MLLGWKDRNL ISASAWY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-61 | 214 | 576 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-61 | 214 | 576 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G131100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317558.1 | 0.0 | scarecrow-like protein 21 isoform X1 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | B9I072 | 0.0 | B9I072_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s13460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4299 | 33 | 60 | Representative plant | OGRP8948 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-175 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G131100.1 |
Entrez Gene | 7470916 |
Publications ? help Back to Top | |||
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