PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G129500.1 | ||||||||
Common Name | POPTR_0011s13320g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 453aa MW: 49461.3 Da PI: 6.4418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 5.9e-06 | 343 | 381 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Potri.011G129500.1 343 ARKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381 6778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.925 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0026 | 338 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-11 | 342 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-6 | 344 | 385 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-9 | 346 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MADEYTSTNW WDSSSSSRNR FDSTGSSSTT SGHTSLGSFA WPTEMVDVKG RSSMETVSVS 60 DSSVVFHDSQ KLQQGHDSSA DLHMMGLGLS SPAIDWNQAL LRGDKSENSF RSMLQDNLSS 120 STNYQQETGI GSSQAQWRSS ERVFAGVSGD SSMNEFKQMN RGFSLDQPQF SPHGSSSDST 180 VTGQGLQSSF PMDSSGIYGS PSTMLQGLLG SDNQVQQSSF DNRSMGYAYG ANYGVSTNEL 240 LPSWSKIPQF LRNSPPKQPP HNQLHLSNNA PFWNASSSAM SDVRPSFFPS MQPQFTTSNF 300 DEKPKQNISE VRDSNTAVKK SGGEAGAKRP RNETPSPSPA FKARKEKMGD RITALQQLVS 360 PFGKTDTASV LSEAIEYIKF LHEQVTVLCT PYMKNGAPIH HQQSSEKSRD SEGQKQDLRS 420 LGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G129500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317553.1 | 0.0 | transcription factor bHLH123 | ||||
Swissprot | Q8GXT3 | 3e-92 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2I4KKE8 | 0.0 | A0A2I4KKE8_POPTR; BHLH family protein | ||||
STRING | POPTR_0011s13320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G129500.1 |
Entrez Gene | 7470906 |
Publications ? help Back to Top | |||
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