 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.011G125600.1 |
| Common Name | POPTR_0011s12790g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NZZ/SPL |
| Protein Properties |
Length: 324aa MW: 35441.5 Da PI: 8.3542 |
| Description |
NZZ/SPL family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.011G125600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NOZZLE | 24 | 6.8e-08 | 6 | 215 | 4 | 177 |
NOZZLE 4 slffmstdqnsvrnpnellrntrlvvnssgeirtetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatv..gd.... 88
slf+m ++n + + + t+ + r t + ++p + + q +kk rgmgva+le +i+e k ++ a++ g
Potri.011G125600.1 6 SLFLMPNNDNKQEPTQTMAISTKP----AEPARRSTATNQSKRPTTSKC-QTRKKQCQRGMGVAQLESLRIQERWKAITEANQniGAlnlq 91
566666655554333333333333....334555666667777876655.55677789***************999996654411431111 PP
NOZZLE 89 .tssv.......aai..sntatrlpvpvdrgvvlqgfps.......................slgssrilcggvgsgqvmidpvis...pw 143
t + + +n+ ++ v+rgv g + g gsgqv+++p + p
Potri.011G125600.1 92 pTQQLhdhypsnYNTdnNNQMLQYGTTVNRGVP-----MssnggvfngflgwdhqggvvvkrVDGFNVNNNDGFGSGQVFVNPYLVgsvPV 177
122111111000111002222334444555543.....24455566777779988877777433447777889999999999965312355 PP
NOZZLE 144 gfvetsa....tthelssisnpqmynassnnrcdtcfk 177
v + a +++elssi++ ++ rcd cfk
Potri.011G125600.1 178 HQVGAPApvfeASKELSSIPKVMQHQQYEPSRCDLCFK 215
555554422224679******9999999999******9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MATPLSLFLM PNNDNKQEPT QTMAISTKPA EPARRSTATN QSKRPTTSKC QTRKKQCQRG 60
MGVAQLESLR IQERWKAITE ANQNIGALNL QPTQQLHDHY PSNYNTDNNN QMLQYGTTVN 120
RGVPMSSNGG VFNGFLGWDH QGGVVVKRVD GFNVNNNDGF GSGQVFVNPY LVGSVPVHQV 180
GAPAPVFEAS KELSSIPKVM QHQQYEPSRC DLCFKMGGFS ARAARSAPYA NHNHNNNEGT 240
SEVMAVHRKG NNPLGRNVIM EYEFFPGKNG ENTCFKEMEF PPPEASVAVG TGEAFCVTTY 300
SDYSGYSASN ASNSIDLSLK LSY*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216449 | 0.0 | AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence. |
