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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.011G046700.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
NAC |
Protein Properties |
Length: 355aa MW: 39245 Da PI: 9.3069 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.011G046700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 172.6 | 1.2e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
Potri.011G046700.1 15 LPPGFRFHPTDEELVVHYLKKKVASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 104
79****************************.89***************8888999************************************ PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+l++ + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
Potri.011G046700.1 105 ILTSnGAQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
*99856778***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKKKVASV PLPVTIIAEI DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG AQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLINNNPSSK PPGDSANKKG GSLRLDDWVL CRIYKKNNPQ 180 RQMDQMEEDS MEGMFTTLPS TSSNKNPKHP SVSKPTGYAS LLENEDTFFE GILTGDGMQN 240 SSISQLPSSS SKPNMSMTSV STNTLSEKRS LPYHQYWNET TGLPMGLANS SAKRFHGDLN 300 SGITGTQEDN NSFVSLLNQF PQSTPLVHPS TLLGSLGDGV LRQTFQLSSL NWNS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-75 | 15 | 178 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-75 | 15 | 178 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-75 | 15 | 178 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-75 | 15 | 178 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-75 | 15 | 178 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-75 | 15 | 178 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-75 | 15 | 178 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |