PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G046700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 355aa    MW: 39245 Da    PI: 9.3069
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G046700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-53151421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Potri.011G046700.1  15 LPPGFRFHPTDEELVVHYLKKKVASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 104
                         79****************************.89***************8888999************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Potri.011G046700.1 105 ILTSnGAQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                         *99856778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6410176IPR003441NAC domain
PROSITE profilePS5100562.23115176IPR003441NAC domain
PfamPF023652.5E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKKKVASV PLPVTIIAEI DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG AQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLINNNPSSK PPGDSANKKG GSLRLDDWVL CRIYKKNNPQ  180
RQMDQMEEDS MEGMFTTLPS TSSNKNPKHP SVSKPTGYAS LLENEDTFFE GILTGDGMQN  240
SSISQLPSSS SKPNMSMTSV STNTLSEKRS LPYHQYWNET TGLPMGLANS SAKRFHGDLN  300
SGITGTQEDN NSFVSLLNQF PQSTPLVHPS TLLGSLGDGV LRQTFQLSSL NWNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-751517817167NO APICAL MERISTEM PROTEIN
1ut4_B1e-751517817167NO APICAL MERISTEM PROTEIN
1ut7_A1e-751517817167NO APICAL MERISTEM PROTEIN
1ut7_B1e-751517817167NO APICAL MERISTEM PROTEIN
3swm_A1e-751517820170NAC domain-containing protein 19
3swm_B1e-751517820170NAC domain-containing protein 19
3swm_C1e-751517820170NAC domain-containing protein 19
3swm_D1e-751517820170NAC domain-containing protein 19
3swp_A1e-751517820170NAC domain-containing protein 19
3swp_B1e-751517820170NAC domain-containing protein 19
3swp_C1e-751517820170NAC domain-containing protein 19
3swp_D1e-751517820170NAC domain-containing protein 19
4dul_A1e-751517817167NAC domain-containing protein 19
4dul_B1e-751517817167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G046700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436822.10.0NAC transcription factor 25
SwissprotQ8GY421e-112NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2K1YFN30.0A0A2K1YFN3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-114NAC domain containing protein 25