PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G217700.1 | ||||||||
Common Name | POPTR_0010s22470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23262.4 Da PI: 6.0874 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.1 | 3.1e-43 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q++ l+ Potri.010G217700.1 60 PCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAISQLQKQVSDLQ 150 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Potri.010G217700.1 151 AQLAKAQAE 159 ****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.058 | 59 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-43 | 60 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDMIEQSAAI SPINVPSQFS YSPSSSSPPS SHHSSPSKSS PNLTPPSAAT PPPPPPVVSP 60 CAACKILRRR CVDKCVLAPY FPPSEPYKFT IAHRVFGASN IIKFLQELPE SQRADAVSSM 120 VYEANARIRD PVYGCAGAIS QLQKQVSDLQ AQLAKAQAEV VNMQCQQANL VALLCMEMTQ 180 SQQEPILQQH QYVDTSCFLD ENNLGTSWEP LWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-44 | 52 | 167 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-44 | 52 | 167 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G217700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ284165 | 0.0 | HQ284165.1 Populus tremula x Populus alba lateral organ boundaries domain 1 (LBD1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315279.1 | 1e-155 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B9HU24 | 1e-154 | B9HU24_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s22470.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-68 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G217700.1 |
Entrez Gene | 7489628 |