PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G130000.1
Common NamePOPTR_0010s14010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 360aa    MW: 40049 Da    PI: 6.3228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G130000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14165211354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Potri.010G130000.1 165 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 211
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-12165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14166217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-15166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-5175214No hitNo description
Gene3DG3DSA:3.30.70.2602.4E-5247297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MCGLKEEDQG ECSQTIHNLQ NYQEQLLLQY HQQMQQHQQQ QSSDIYGGAR GSGFIFPEVS  60
PILPWPLPPV HSFNPAHFTP NHPVRDHDPF LIPPPVPSSY GGLFNRRAPS LQFAYDGTPS  120
DHLRIISDTL GPVVQPGSAP FGLQAELSKM TAQEIMDAKA LAASKSHSEA ERRRRERINN  180
HLAKLRSLLP STTKTDKASL LAEVIQHVKE LKRQTTLIAE TSPVPTEMDE LTVDTADEDG  240
KFVIKASLCC EDRPDLLPDL IKTLKALRLR TLKAEITTLG GRVKNVLFIS GEEDSSSDSN  300
DQHQQQEPLQ YSISSIQEAL KAVMEKTGGD ESSSGSVKRQ RTNINLLEQQ QQQQQHRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G130000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494810.0AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467196.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-112BH030_ARATH; Transcription factor bHLH30
TrEMBLB9HWM20.0B9HWM2_POPTR; BHLH family protein
STRINGPOPTR_0010s14010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]