PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G098900.1
Common NamePOPTR_0010s10920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 434aa    MW: 47889.1 Da    PI: 7.3687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G098900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000553423613655
                         S-STCHHHHHHHHHHHHHHH CS
                 HLH  36 kKlsKaeiLekAveYIksLq 55 
                         ++ + a++L +A++YIk+Lq
  Potri.010G098900.1 342 GRTDTASVLYEAIQYIKYLQ 361
                         68999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.585311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-9326374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-7326367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-4326365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAQECTESSV AISPSIPLNW WDLHHANSLS SLTNTSPWHQ SNPSSNSSCE EDLSMSTSFT  60
NASNHSGLTV ESARQLVEPA SSTELMGEHA YSHLWSQILL GVGSNEELDN SQDVGENLLD  120
ALSSKTSSTM SSGIFGPACD YFKRMDSDWE FTNPASLNNF EKHLNGFSES LIGGGRFNKV  180
VSQLSIAPPN PERPTAPFRR SFNSNGVGYH IGLNSSVVGD NSKYYHGMPD ATNRSARNFA  240
DALTFSNRLR KPLIDIQVPK PCFKSINLSD SRNQGLQTSS PSGKGHGTTN ERKRRRSEET  300
SETAAKKAKH ESSTVSSVKI QAPKVKLSER VTALQQIVSP FGRTDTASVL YEAIQYIKYL  360
QEQVQLFSNP YMKTTNSHKD PWAGLDRKDK GDARIDLRSR GLCLVPISCT PQIYHDNAGS  420
DYWTPTYREC LYR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291295RKRRR
2291296RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G098900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165975e-98AC216597.1 Populus trichocarpa clone POP032-B19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466454.10.0uncharacterized protein LOC7459079
TrEMBLB9HJN30.0B9HJN3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Representative plantOGRP962056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.16e-63bHLH family protein