PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G041500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 276aa    MW: 31089.6 Da    PI: 8.2128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G041500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11115157754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           Er+RR ri+++++ L   +Pk +      K++Ka+iL  A++YI++L
  Potri.010G041500.1 115 VTERNRRTRIKTGLFSLSARVPKiS------KMDKAAILGDAIDYISEL 157
                         67*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-13107171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.408108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-9110162No hitNo description
Gene3DG3DSA:4.10.280.103.5E-13110174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-9114157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLCPLKQEAM IGHCYSNSSL NKYCLDLFLE ENLLLSCHLL SLFPQIQFLH PLTQPNNNLS  60
FEGSSSSSNP SNEASSFVSY ASQFPQHGHM KLLQRESSEI YPGSESDGYK SKNLVTERNR  120
RTRIKTGLFS LSARVPKISK MDKAAILGDA IDYISELLKD VKNLRDEIKN AEEEECRASN  180
MELKTSKLET CQKGCMSSTK VNQDPSGFVK KERTEVQLEV DQIGKRHFLL KFLCEKKRGG  240
FGRLMETIHS LGLQIHDANI TTFNGKFLNI LKIES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G041500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034127.11e-121PREDICTED: transcription factor bHLH90 isoform X1
RefseqXP_011034128.11e-121PREDICTED: transcription factor bHLH90 isoform X2
TrEMBLA0A2K1YNM90.0A0A2K1YNM9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s19390.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-29bHLH family protein