PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G052900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YA | ||||||||
Protein Properties | Length: 348aa MW: 38180.4 Da PI: 6.4084 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.8 | 2e-29 | 167 | 223 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p++VNaKQy +I++RR++Rak+e +kkl +k+rkpylheSRh+hA+rR+R+sgGrF Potri.009G052900.1 167 QDPVFVNAKQYPGIIRRREQRAKAEVDKKL-IKARKPYLHESRHRHAMRRERSSGGRF 223 58****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-32 | 165 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.047 | 166 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.3E-26 | 169 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.7E-21 | 169 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 171 | 191 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.7E-21 | 200 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MQSKPEKTNV PEPDPSDIQE YTVHSEPWWR NIGYSSMPPA MTGGNASNSE GHNGSESNDD 60 QSLSSGRLNE EDADATKDSQ ATASSQLGNH GHLQNLQGLV SSMTTMHNGL SQSPQFELVS 120 HSIACASNPY QDAYYSGMMA YGHQPLGYPQ FVGMPHARML LPLEVAQDPV FVNAKQYPGI 180 IRRREQRAKA EVDKKLIKAR KPYLHESRHR HAMRRERSSG GRFAKKTGDD ASKNTSEGKL 240 NGSGPVHASQ SRSSSGSELL PSDSVETWNS SEGQKEARES QVHDTFEAHD YVNRGGHYQK 300 HSGLQSSAYG SYLGDNEDGD RSGENEDEDC PGQQLGNQAK RRFFGPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-15 | 167 | 223 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 216 | RHRHAMRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G052900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464100.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024464101.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024464102.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024464103.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024464104.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024464105.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Swissprot | Q9LXV5 | 9e-72 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2K1Z354 | 0.0 | A0A2K1Z354_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s05760.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 | Representative plant | OGRP9696 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 9e-65 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G052900.1 |
Publications ? help Back to Top | |||
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