PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G116000.1
Common NamePOPTR_0008s11490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 353aa    MW: 39285 Da    PI: 6.2752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G116000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14163209354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Potri.008G116000.1 163 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 209
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-12163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-15164225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-14164216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-5173212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MCGLKEEDQE EQTIHNLQNY QEQLLFQYHQ QMQQHHQQQS SDIYGGARGS GLIFPEVSPI  60
LPWPLPPAHS FNPDHFTSNH PVRDHDPFLI PPPIPSSYGG LFNRRSPSLQ FAYDGTSSDH  120
LRIISETLGP VVQPGSAPFG LQAELSNMTA QEIMDAKALA ASKSHSEAER RRRERINNHL  180
AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEMDELT VDTADEDGKF  240
VLKASLCCED RSDLLPDLIK TLKALRLRTL KAEITTLGGR VKNVLFIAGE EDSSSDSNDH  300
QQQQQPLQYS ISSIQEALKS VMEKTGGDES SSGSVKRQRT NINVLQQQHR SL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G116000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494810.0AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311433.10.0transcription factor bHLH30
RefseqXP_024461960.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-109BH030_ARATH; Transcription factor bHLH30
TrEMBLB9HIY40.0B9HIY4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]