PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G098600.1
Common NamePOPTR_0008s09810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 1036aa    MW: 115390 Da    PI: 7.4822
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G098600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.6e-40149226178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Potri.008G098600.1 149 VCQVEDCRADLSNAKDYHRRHKVCNAHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-32144211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.958147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-37148229IPR004333Transcription factor, SBP-box
PfamPF031105.8E-29150223IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.66E-8800947IPR020683Ankyrin repeat-containing domain
SMARTSM00248560802831IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.6E-8806934IPR020683Ankyrin repeat-containing domain
CDDcd002042.48E-8807919No hitNo description
SMARTSM0024842859889IPR002110Ankyrin repeat
SMARTSM00248330899928IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MEATIGGKSR HFYGPVVSDL KAVGKRSLEW DLNDWKWDGD LFKASPLNSA PSDCRSRQLF  60
PTGPVLHENA GLWNSSSSCS DDNDNLGDEK GKRELEKRRR VVFVEDENLN NEVGSLNLKL  120
GEQVYPLMDE DAKSGKKTKV TMTASNRAVC QVEDCRADLS NAKDYHRRHK VCNAHSKASK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPENLV NEGSLNDEKG  240
SSYLLISLLR ILSNLHSNGS DQTKDQDLLS HILRSLADLA GATNGRSLSE SLQGSQGLAN  300
ARAIVGNLDK AHDALTNGPE SARPSSSASK KDDCIISQDL LRPLGQCGTV PISDLVQKRI  360
LDNDAQVGTL QAPSGSQSIT LFPSRNNLPA KTNEPEATVG RIKLNNFDLN NAYDDSQHSV  420
ENLERSHAPV DTGMGSFSCP LWVWSDSQKT SPPHTSGKSD STFSQSPSSS SGEAQIRTDR  480
IVFKLFGKDP NDFPVALRTQ ILDWLSHSPT DIESYIRPGC IVLTIYLCLE KSKWEEVCLD  540
LGASLSRLLN TSSDSFWQTG WVYVRVQNCV SFIYNGRVVL DTPLPIKSHK NCRISSITPI  600
AVSLSERTQF VVRGFDIAQP MTRLLCAVEG KYLVQETCYD LMDGADTMNE LDKPQYLNFQ  660
CSVPNFVGRG FIEVEDHGLS SSFFPFIVAE PEVCSEIRML EDAIQVAETA TDMHTIAERM  720
DIKNQALDFI HEMGWLLHRS RLKFRLGQLD PNLDLFPFKR FKWLIQFSMD HDWCAVVRKL  780
LAVVFDGTVD AGEHSSIELA LLDMGLLHRA VRRNCRPMVE LLLRYIPDKK FGGTGTQQNQ  840
LVDGRNSRFM FKPDVVGPAG LTPLHVAACR DGAENVLDAL TDDPGLVGID AWKRARDSTG  900
LTPYDYACLR GHYSYIHLIQ RKINKKSESG NVVLDIPSSL VDCNSKQKDG NELPKVTSLH  960
TEKIKMKATH QHCKLCEQKL VCGAARTSLV YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY  1020
VFQPFRWELL KYGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291492231084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRV
2218224KRRRKTH
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G098600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311356.20.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLB9HIH20.0B9HIH2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]