PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G062700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 44610.6 Da PI: 5.8307 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 53 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + Potri.008G062700.1 53 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 98 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 61.6 | 1.6e-19 | 105 | 149 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ a++++G++ W++Iar ++ gRt++++k++w++ Potri.008G062700.1 105 RKPFTEEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 149 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.887 | 48 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-32 | 50 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 52 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-17 | 53 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 54 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-14 | 55 | 97 | No hit | No description |
PROSITE profile | PS51294 | 22.418 | 104 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-18 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 105 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 107 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-14 | 107 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MQNQTENNND AMRITEGDRE NQTNSPTGGD GGAESGELGG GIGGNGRTNG KVKGPWSPEE 60 DAVLSQLVSK FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PCLTRKPFTE EEDRIIIAAH 120 AKHGNKWAAI ARLLPGRTDN SIKNHWNSTL RRRWADLIRL KPGTSDVMED GSIEITRASS 180 EETLSVCDIS SSQPPEVRDV TIDDQPSQHE DKAQTDTIPQ TNEVTVATEP HGNPTLPRPE 240 ARVSAFKVYN PPSGLKMSSG LTRTLPTHGP SVQTPKPDLG SCKFLEDVHC EPIIPSRCGY 300 GCCATPSGGH PPSSLLGPEF VEYEEPPPFS SQELISIATD LNNIAWMKSG LENSSTGIPS 360 NAASYRMSQG TPVDSQMGMS EQNLRNGHMH FEEGRSRLMG TMAGTISTQM PA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-38 | 52 | 153 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-38 | 52 | 153 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G062700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU278456 | 0.0 | GU278456.1 Populus balsamifera isolate WHR03 haplotype A myb family transcription factor 109 gene, partial sequence. | |||
GenBank | GU278459 | 0.0 | GU278459.1 Populus balsamifera isolate STL13 haplotype B myb family transcription factor 109 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462232.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | A0A2K1ZCQ7 | 0.0 | A0A2K1ZCQ7_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_008330m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-96 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G062700.1 |