PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G043900.1 | ||||||||
Common Name | POPTR_0008s04350g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24036.6 Da PI: 7.6081 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.9 | 7.5e-43 | 68 | 167 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i++lq+q++ l+ Potri.008G043900.1 68 PCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAISQLQKQVSDLQ 158 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Potri.008G043900.1 159 AQLAKAQAE 167 ****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.945 | 67 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-43 | 68 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDMLQKPAAI SPVKAPSQFS CSPSSSSSPP SCHHSCPSTF HSPSKSNSPG LTSPSAATLP 60 PPPVVITPCA ACKILRRRCV DKCVLAPYFP PSEPYKFTIA HRVFGASNII KFLQELPESQ 120 RADAVSSMVY EASARIRDPV YGCAGAISQL QKQVSDLQAQ LAKAQAEVVN MQCQQANLVA 180 LLCMEMKQSQ QEPILQQHQY IDTSCFLDEN NLGASWEPLW T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-44 | 60 | 175 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-44 | 60 | 175 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G043900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312035.2 | 1e-161 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B9HLY2 | 1e-160 | B9HLY2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s04350.1 | 1e-161 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-73 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G043900.1 |
Entrez Gene | 7469762 |