PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.008G032300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 304aa MW: 33750.1 Da PI: 7.9513 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.001 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Potri.008G032300.1 126 YECKTCSRTFPSFQALGGHRASH 148 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00017 | 203 | 225 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F++ L H+r+H Potri.008G032300.1 203 HECSVCGAVFTSGQALGGHMRRH 225 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.2E-13 | 125 | 150 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.09E-7 | 125 | 148 | No hit | No description |
PROSITE profile | PS50157 | 10.575 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.09E-7 | 198 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 201 | 227 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.0E-13 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0062 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MEASEEVTTR VAKGKRTKRL RVQSATPFGL TTDSSSGDGG TNWSPTTSID EFQDSTEEEE 60 DMANCLILLA KGHSRDFPKQ QQHHHHRDHD HDHDSRGGVY TAKFNSRKFL ETANSTGSGR 120 VGYYVYECKT CSRTFPSFQA LGGHRASHKK PKAIHNDEKK QNLSISSDEE DGHYKNVSSL 180 SLQLSENNTN RGTYSNHNKG KIHECSVCGA VFTSGQALGG HMRRHRGPLV SSTTTLSLTP 240 MTIESEEPKR ARNVLSLDLD LNLPAPEDDK FAFASKQQQK QQQQKQQNTS LVFTSPALVD 300 CHY* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.008G032300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311984.3 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A2K1ZAW8 | 0.0 | A0A2K1ZAW8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23610.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04390.1 | 9e-65 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.008G032300.1 |