PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G025600.1
Common NamePOPTR_0008s02580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 572aa    MW: 66028 Da    PI: 6.6006
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G025600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.42.5e-30122207187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Potri.008G025600.1 122 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMaEEHGYHRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 207
                         8*************************************999*****************************98..55667*******85 PP
2trihelix73.73.2e-23429513286
            trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+ e+l  i++r++m++r+++ g ++++lWee+++ m++ g+ rs  +Ckekwe++n ++  ++e++kkr +e+ +t  yf+qle
  Potri.008G025600.1 429 WTEPEILSFIQLRTSMDSRFQEnGYSNEGLWEEIAAEMASLGYDRSVDECKEKWESMNIYFNMTTESNKKR-KEDLRTSNYFQQLE 513
                         *********************84679********************************************8.788889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015115180IPR017877Myb-like domain
SMARTSM007170.018119182IPR001005SANT/Myb domain
CDDcd122033.64E-20121187No hitNo description
PfamPF138372.4E-21121208No hitNo description
PROSITE profilePS500907.399421486IPR017877Myb-like domain
SMARTSM007170.01425488IPR001005SANT/Myb domain
CDDcd122038.01E-24427493No hitNo description
PfamPF138371.5E-17428514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSEHHHQYGM PDLRQLVAGR SHFQGTQQGG EPFFVQSRNL AAPQTHHFES IMVGHEAMLS  60
SGLVKLGGHH DRYCTNATNI NTTNSATIGT SSSAGVGTLY GVEMESATTA GWIGNDGGNN  120
SRWPRQETLT LLEIRSRLDS RFKEANQKGP LWDEVSRIMA EEHGYHRSGK KCREKFENLY  180
KYYKKTKEGK AGRQDGKHYR FFRQLEALYG EPSNQASASE THFVNNTLLY QAPMSNTINQ  240
ESQETFQENK HSESLSFSNT SEFETSSSEN NDDDLSAIAY NMMNRSTEKQ KGINESQSLA  300
RPKKSWKLKV KDFVDSQMRK LMEKQDAWME KMLKTIEDRE HERMCREEEW TKQELARFDQ  360
EHEFWAKERA WIEARDAALM EALKKHTEKG LELSSSVEQI AVATQRHNKN PDSAVAKKIQ  420
KDKFNNITWT EPEILSFIQL RTSMDSRFQE NGYSNEGLWE EIAAEMASLG YDRSVDECKE  480
KWESMNIYFN MTTESNKKRK EDLRTSNYFQ QLESYNGMNS SPSNSYVGSQ VNDNSCFQVQ  540
INEGDQHLWN TNKFDLKLNK EKNQQQLWHN K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G025600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840630.0AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144190.0AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311966.20.0trihelix transcription factor PTL
TrEMBLB9HL340.0B9HL34_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-116Trihelix family protein