PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G128800.1

Common Name

POPTR_0007s01940g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 254aa MW: 29360.9 Da PI: 6.0159

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G128800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.7e-24	76	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ + +++ + + tr gC a++++ ++ gkw+vtk+++eH+H+ Potri.007G128800.1 76 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHK 163 6****************************************98882233..244899***********.************** PP FAR1 89 la 90 l+ Potri.007G128800.1 164 LM 165 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-21	76	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDKQSVHGFD SNDSDLDLHG EAYECGRIED ELQNNLDFCV DEDDKTSVQC IELAVNTEGL 60 EPCEGMEFNS RDEAREFYIS YGRCTGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY 120 VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKEH THKLMSPSKV PWRGSGKQLI 180 SEDEKDKRIR ELSLELYNER QKCKRRCAVY EEQLNMILQD LEKHTEHVSK KVDDVVKSIR 240 EIEEEHSDDS NSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G128800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309804.2	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9HH49	0.0	B9HH49_POPTR; Uncharacterized protein
STRING	POPTR_0007s01940.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-37	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G128800.1
Entrez Gene	7491756