PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G020200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 389aa    MW: 43214.4 Da    PI: 8.8013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G020200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-052883251254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ ++++ L++l+ +      +K + a++L++A+ YI+ L
  Potri.007G020200.1 288 RKEKLGDRIAALQRLVAPY-----GKTDTASVLTEAIGYIQFL 325
                         7788899*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.249276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-5286330No hitNo description
SuperFamilySSF474598.37E-11286338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-8286333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDIRSISFKN SLQVIILLYY HNLLITIRFH AAAFGCWNRD WKRKKNINSN TNNNYQTDCI  60
PNSRVSWPPA SLTPGLSFCH ASDFNQPSTA NEFLLAKTKE ELPDPFFKPG EMMHTGSNVE  120
GSYFLSSKYK HQYSHDLGEN QWPLNSLSSL HHISDSNAQK TASLQNLSGC NRYNFSHILP  180
SISISTSDLC SSLVSSSLDL NLQAVDLLST STYDGAASFS QSSENTLDHF TREHKDSPSK  240
SCSKTSTIED GSGRKKRPSS NFQSKNFLTE AKKNRSTPRS LCPPLKVRKE KLGDRIAALQ  300
RLVAPYGKTD TASVLTEAIG YIQFLHDQVQ TLSVPYMKSS NIQPARTTQV SSNEEDGKGQ  360
QKTDLRSRGL CLVPLSCVSF FNTCNGDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G020200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461607.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A3N7F9420.0A0A3N7F942_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-44bHLH family protein