PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G013600.1

Common Name

POPTR_0007s13990g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 558aa MW: 61225.9 Da PI: 9.1581

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G013600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	503	526	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+ C+ G+ C+F H+ Potri.007G013600.1 503 QKPCMYFRTPKGCRNGSDCHFQHD 526 789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.69	500	528	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-4	504	527	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MKRSRKSNRV SWAPGLYLCQ VRLFLSEDCP SEVGGQVRDL LQKNASRLLP ISSSKDSNDL 60 PPGFEGTHFL NPCIKELSCI PRVQWKCPPN FVVNYNWHVT DGEESQESEA QKLREMRVLE 120 AVYPRPSSVP PSPAVSLDVE EENYDDSLTP IIPLIPVEEE EAAEMPPALT EPLKNPTTSL 180 SPALPPVLLS SGILNSSKCN TPALNPPASQ KPELGRLPDP GTHPITAASA AVTAIMKSKE 240 QGGLIDTDLL VKIFRDPKMV DKLISGNQTP PVTSRPVSSS RSPLYAKPAM VSAPSPANGN 300 LQHLPSEELP WSKPTGQIPI PCPKPAVHFP SMPYDGSLHH QLSQVQTTVT RTSMHQDAVP 360 ATGLGVPVPI QEPGKVSAPR PPVGHLFSAS NSMQTTPSLV PTESKTPQIS YFKDIHPNPM 420 FDLVKSTLVK KPKQPISVPQ AGKKTNLVKD VNYIKNLIKE HGTAKKEMKD RNLFHNGSHY 480 YNHTQNPESI QNSKNRELKP KFQKPCMYFR TPKGCRNGSD CHFQHDMSFQ FQTGSGDSKL 540 QVAKRMKFSG EITAGRT*

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MKRSRKSNRV SWAPGLYLCQ VRLFLSEDCP SEVGGQVRDL LQKNASRLLP ISSSKDSNDL  60
PPGFEGTHFL NPCIKELSCI PRVQWKCPPN FVVNYNWHVT DGEESQESEA QKLREMRVLE  120
AVYPRPSSVP PSPAVSLDVE EENYDDSLTP IIPLIPVEEE EAAEMPPALT EPLKNPTTSL  180
SPALPPVLLS SGILNSSKCN TPALNPPASQ KPELGRLPDP GTHPITAASA AVTAIMKSKE  240
QGGLIDTDLL VKIFRDPKMV DKLISGNQTP PVTSRPVSSS RSPLYAKPAM VSAPSPANGN  300
LQHLPSEELP WSKPTGQIPI PCPKPAVHFP SMPYDGSLHH QLSQVQTTVT RTSMHQDAVP  360
ATGLGVPVPI QEPGKVSAPR PPVGHLFSAS NSMQTTPSLV PTESKTPQIS YFKDIHPNPM  420
FDLVKSTLVK KPKQPISVPQ AGKKTNLVKD VNYIKNLIKE HGTAKKEMKD RNLFHNGSHY  480
YNHTQNPESI QNSKNRELKP KFQKPCMYFR TPKGCRNGSD CHFQHDMSFQ FQTGSGDSKL  540
QVAKRMKFSG EITAGRT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.1728	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G013600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214417	0.0	AC214417.1 Populus trichocarpa clone POP037-E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310301.1	0.0	zinc finger CCCH domain-containing protein 6
TrEMBL	B9HFK4	0.0	B9HFK4_POPTR; Uncharacterized protein
STRING	POPTR_0007s13990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9
Representative plant	OGRP2129	6	8

Link Out ? help Back to Top
Phytozome	Potri.007G013600.1
Entrez Gene	7495537