PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G005000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 336aa MW: 36850.8 Da PI: 10.5335 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.4e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l+ +v ++G+g W+tI R+ ++k++w++ Potri.007G005000.2 5 KQKWTSEEEAALKAGVLKHGTGKWRTILMDPEfsavlRLRSNVDLKDKWRN 55 79***********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.879 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-14 | 2 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.00E-17 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.5E-10 | 116 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 19.976 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 4.35E-15 | 122 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.7E-13 | 123 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 9.8E-9 | 124 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV LKHGTGKWRT ILMDPEFSAV LRLRSNVDLK DKWRNINVTA 60 IWGSRKKAKI TLKRRPLTPK REENAKALST VVQTNEEVVD AKPLAFASGT PGNGGPKDLL 120 ARLDNLILEA ITTLKEPTGS DRASIALYIQ EKYWAPMNLR KLLGGKLKHL TANGNLIMVQ 180 HKYRIAPSST FSEGRKNHAL PEGKRKDALK LEKSKNKILT KAHIDRDLSK IQGMTALEAA 240 AAAAKAVAEA ESAIADAEAA AREAEKAEAE AEAAQVFAKA AIKAFKLRAC HTWWQFVFRM 300 RIMPAMICSA IGQECFSVNS SGELKLLITF IHSFS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G005000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148459 | 0.0 | EF148459.1 Populus trichocarpa x Populus deltoides clone WS01315_H07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461392.1 | 0.0 | telomere repeat-binding factor 2 isoform X1 | ||||
Refseq | XP_024461394.1 | 0.0 | telomere repeat-binding factor 2 isoform X1 | ||||
Swissprot | Q9FJW5 | 6e-74 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A2K1ZLY4 | 0.0 | A0A2K1ZLY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s14920.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 6e-68 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G005000.2 |
Publications ? help Back to Top | |||
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