PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G201900.1
Common NamePOPTR_0006s21640g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 325aa    MW: 34968.6 Da    PI: 9.3518
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G201900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.43.3e-30158213258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p+YVNaKQy++I++RR++Rak++ e+kl  ++rkpy+h SRh hA+rRpRg+gGrF
  Potri.006G201900.1 158 VPIYVNAKQYHGIIRRRKSRAKAALENKL-PRNRKPYMHRSRHLHAMRRPRGCGGRF 213
                         59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-34155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.783156216IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-26159213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.0E-22159181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.0E-22190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAMKTFYLKE HEGSVHNPNG QLSTVPWWTA FGSQAVNGES CGLLKALPIE QPAGGGETAT  60
KLARMGTEQG LDKGNITQFT IFPGDCKPSG GGQKSVQGAI SLQTALPEYY AHFDLGFGQP  120
VICAKYPVVD QCYGLFSTFG PQISGRIMLP MSTTTDDVPI YVNAKQYHGI IRRRKSRAKA  180
ALENKLPRNR KPYMHRSRHL HAMRRPRGCG GRFLNTKELN DGKGITEAKK AGDFQLSQPT  240
GSQSSEVLES GGATLNSMEA NCGGSNLSGS EVTSLYNRVD FDRFPFNHHG PTVHGFSGMD  300
GGHGIGIGMP SKWIAAADNC SNLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18159218463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G201900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101320.0AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381938.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_024459808.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLU5G8I20.0U5G8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-50nuclear factor Y, subunit A10