PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G152100.1
Common NamePOPTR_0006s15670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 611aa    MW: 68079.7 Da    PI: 6.7781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G152100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-063253391226
                         TS--TTTTT-SS-SS CS
             zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                         +G C++G++C+F H+
  Potri.006G152100.1 325 SGSCPRGEKCNFQHD 339
                         69************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.01E-447234No hitNo description
PROSITE profilePS5010314.014313341IPR000571Zinc finger, CCCH-type
SMARTSM003560.057315340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5317340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5317342IPR000571Zinc finger, CCCH-type
SMARTSM003560.026345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803350373IPR000571Zinc finger, CCCH-type
PfamPF046775.1E-38389499IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541976.99E-8393493IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.109.6E-5396510IPR011146HIT-like domain
PfamPF046761.4E-16529607IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.109.6E-5581603IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MSTPRILLCG DVLGRLNQLF KRVQSVNKSA GPFDALFCVG QFFPDSAEQL EEFTDYIEGG  60
GGRSQIPLPT YFIGDYGVAA PKVLSTASRN SANLGFKMDG FKICDNLFWL RGSGKFTLHG  120
LSVVYLSGRQ SSNGQHFGTY SQDDVDALRA LAEEPGVVDL FLTNEWPSGV TNRASASDIP  180
AGFLDTTGSD SSVSELVAEI KPRYHFAGTK GVFYAREPYS NVDAVHVTRF FGLAMVGNKD  240
KQKFIHAISP TPASTMSAAE ISMKPPNTTL SPYTLVVDKT ALEEVTKRST ASVSDSQYWR  300
YDVSHKRHKS GSGEGNKLCF KFIYSGSCPR GEKCNFQHDM DAREQYLGGV CLDFLIKGKC  360
ERGPDCNFKH NLQNEGESHS RRRRGSENDN GNRSKECWFC LSSPNVESHL IISIGEFYYC  420
ALPKGPLVQD HVLVIPIEHA PCTLSLTQQS NSELVKFQNS LKLYYKNRGK EAILFEWISK  480
RSSHANIQVV PVPSTKAAAV QDICNLAAEK LGFKFVVMKF NNSSDGREWL RTQFDRNYSF  540
FYVELTEGTI LSHSVEENEN FPAQFGREVL AGLLNMPERA DWRNCALGKD EETKMAEEFK  600
KQFEELDPNQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U2e-12395583673862CWF19-like protein 2
6id1_U2e-12395583673862CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G152100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878530.0AC187853.2 Populus trichocarpa clone Pop1-117C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460378.10.0zinc finger CCCH domain-containing protein 64 isoform X2
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2K2A2U40.0A0A2K2A2U4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923
Representative plantOGRP534877