PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G148800.1
Common NamePOPTR_0006s15310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 396aa    MW: 44309.2 Da    PI: 9.8459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G148800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13221265554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + Er+RR++iN++f  Lr++lP+       K +Ka+iL+++ eY+ sL
  Potri.006G148800.1 221 HMISERKRREKINESFKALRSILPPE-----AKKDKASILTRTREYLTSL 265
                         8899*********************6.....599*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17213283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.40E-12214270No hitNo description
PROSITE profilePS5088815.618216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-17219285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10221265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDSPEISSLI FTIPSSSHMP EAHREAPSLL PPILPSTSSP LQHTLQLLQP VLPTPTGNIL  60
QQVLQSLQQE PSPQQQAIQS SQSTPSTTSL LQEAMQPLQA IQSSTSPHQQ ALQAFALERN  120
IQLPTPESED AVMTRAILAV LTFPSPSSSS SSHSLPHMHR VRQGASAFNN YRSALAPKTQ  180
TRASLHRHSM LTRVITYYRR LNIERREHML GGRPSSTQLH HMISERKRRE KINESFKALR  240
SILPPEAKKD KASILTRTRE YLTSLKAQVE ELTRKNQKLE AQLSKAAVSQ VRDSSYERLD  300
VRVTHISEST SEQRIIDLVV NLRGESPILD TVITRILEFL RQVTDVSLIS IEASTHTAES  360
TSFNRVILRL NIEGTDWDES GFQEAVKRVV EDLAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229ERKRRE
2225230RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G148800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381662.20.0putative transcription factor bHLH041 isoform X1
SwissprotQ9LTS43e-61BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A3N7FZ360.0A0A3N7FZ36_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]