PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G126300.7 | ||||||||
Common Name | POPTR_0006s12820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 12466.6 Da PI: 11.6296 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 2 | 49 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WTt E +l+d+++q+G+g+W+ I + m Rt+ +++++w+++l Potri.006G126300.7 2 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 49 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd11660 | 1.21E-15 | 1 | 50 | No hit | No description |
PROSITE profile | PS51294 | 14.811 | 1 | 53 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-12 | 2 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-17 | 2 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-8 | 2 | 49 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 2.2E-6 | 2 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MWTTPEVMKL IDGIAQYGTG RWTDIKKLMF SSTAYRTPID LRDKWRNLLR ASGAQKRKSN 60 KKEVKEKLKD VVRSLPSSVF RRVRELASLH PYPRFSPGGR YIRRKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1336 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G126300.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231220 | 6e-85 | CU231220.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381433.1 | 2e-69 | uncharacterized protein LOC18100175 | ||||
Refseq | XP_006381434.1 | 2e-69 | uncharacterized protein LOC18100175 | ||||
Refseq | XP_006381436.2 | 2e-69 | uncharacterized protein LOC18100175 | ||||
Refseq | XP_011018717.1 | 2e-69 | PREDICTED: uncharacterized protein LOC105121688 | ||||
Refseq | XP_011018718.1 | 2e-69 | PREDICTED: uncharacterized protein LOC105121688 | ||||
Refseq | XP_024459622.1 | 2e-69 | uncharacterized protein LOC18100175 | ||||
TrEMBL | U5GCT1 | 5e-68 | U5GCT1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12820.2 | 9e-69 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-21 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G126300.7 |
Entrez Gene | 18100175 |