PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G053500.1
Common NamePOPTR_0006s05210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 300aa    MW: 33325.4 Da    PI: 9.7733
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G053500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.4e-33142198158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k+rkpylheSRh hA+rR+Rg+gGrF
  Potri.006G053500.1 142 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKTRKPYLHESRHLHAMRRARGCGGRF 198
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-37140201IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.046141201IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27143198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-24144166IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860146166IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-24175198IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQKTLDRTVT TNYPLSSPSK PWWCSAGHHA IFSNVLGEST KNLSLQESTD DGLGTKASKP  60
HGNVQMDGGT VAYKEKQLNA VSASDGKYGY GDHHHPQQAA SIMIPAMGVY LTQLELAGHS  120
IVHSQYAGPN PSRMVLPHEM AEEPVYVNAK QYHGILRRRQ SRAKAELERK LIKTRKPYLH  180
ESRHLHAMRR ARGCGGRFLN TKKPDTTNNT APDKHTSSDE TVSRNFTSSS SSGPVLSHFS  240
RNSDSSMSND AEVIESLCQM HPHQTYLSKG CTPQFPRYHL SKFPSLSEKM VGERDNKLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21142212272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.103780.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G053500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308961.30.0nuclear transcription factor Y subunit A-10
TrEMBLA0A2K1ZX790.0A0A2K1ZX79_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2298744
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-35nuclear factor Y, subunit A7