PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G037100.1 | ||||||||
Common Name | POPTR_0006s03550g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27232 Da PI: 8.4811 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.5e-13 | 70 | 116 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr llP + K +Ka+ L k+v+ +++L Potri.006G037100.1 70 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVREL 116 58*************************8.....7************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.358 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.22E-11 | 70 | 119 | No hit | No description |
SuperFamily | SSF47459 | 6.28E-14 | 71 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.0082 | 154 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQPENCQENS QLYRFLTENG MINVGPYGFP AAMQTLCTSS STSYHNSNYH FERSVITDMT 60 PEDRALAALK NHKEAEKRRR ERINSHLDKL RGLLPCNSKT DKASLLAKVV QRVRELKQQT 120 SELPGLESFP SETDEVTVLS GEYSSDGQLI FKASLCCEDR SDLMPDLIEI LKSLHLKTLK 180 AEMVTLGGRI RNVLIIAADK DHSVESVHFL QNALKSLLER SNSSERSKRR RVLDRKLVIQ 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 231 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13134 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G037100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144804 | 0.0 | EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307967.2 | 1e-178 | transcription factor bHLH106 | ||||
Refseq | XP_011040758.1 | 1e-178 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 7e-82 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | B9H8T8 | 1e-176 | B9H8T8_POPTR; BHLH family protein | ||||
STRING | POPTR_0006s03550.1 | 1e-177 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 6e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G037100.1 |
Entrez Gene | 7495692 |
Publications ? help Back to Top | |||
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