PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G028300.1
Common NamePOPTR_0302s00220g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 403aa    MW: 44883.1 Da    PI: 4.3578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G028300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.21.9e-2081441127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpk..kvkaeekewyfFskrdkkyat..gkrknra..tksg 81 
                         lppGfrF Ptdeel+ +yL++kv+g+   e+++vik +++y      P ++ k   +k++++ +yfF+   kk+ +   +r +r+  t+ g
  Potri.006G028300.1   8 LPPGFRFLPTDEELIRYYLHRKVHGRLtPEEADVIKLCNLYGEgarPPCEIFKlaGHKGGDDALYFFTILIKKTLNssTQRMSRTvgTDGG 98 
                         79***********************984445577**99*9975344899996323556677899****999887752255777744578** PP

                 NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +W+  g ++ +++  ++e +g+k+ + + ++++p+ ++  W++ ey 
  Potri.006G028300.1  99 TWHGDGVEEVICRLdNTEFKGTKRRFRYQNKQRPD-QHGCWTLLEYG 144
                         *******9988876577779********9777776.8999*****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-226159IPR003441NAC domain
PROSITE profilePS5100526.3488160IPR003441NAC domain
PfamPF023654.7E-159143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MQDILSRLPP GFRFLPTDEE LIRYYLHRKV HGRLTPEEAD VIKLCNLYGE GARPPCEIFK  60
LAGHKGGDDA LYFFTILIKK TLNSSTQRMS RTVGTDGGTW HGDGVEEVIC RLDNTEFKGT  120
KRRFRYQNKQ RPDQHGCWTL LEYGSESISE NVVICKLKIS DHGLKESRKR KSMDSSEVIQ  180
RTVNIDAVIN SGPTMAQSAH DQEPRLLIQN QEMLPLVGTV SNEDNGGFSA TGDTFYSIQN  240
MGLEAPAIGN IEPVLPFQPQ QANFIQEPTI GEHQQMASES FNEHPIISFE PIMLLSEESN  300
IIENQGIMGL ADISTEDYFE NAAANVNFET MTSANENQQM EPASYNGGER VCPAGDNAVT  360
PENAAPAVSA IPALEDDMLE TLMNDTYWLE NLQAMPREEE DS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G028300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494840.0AC149484.1 Populus trichocarpa clone Pop1-69M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380956.10.0NAC domain-containing protein 78
TrEMBLU7DVR40.0U7DVR4_POPTR; Uncharacterized protein
STRINGPOPTR_0302s00220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-15NAC domain containing protein 50