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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G028300.1 |
Common Name | POPTR_0302s00220g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
NAC |
Protein Properties |
Length: 403aa MW: 44883.1 Da PI: 4.3578 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G028300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 65.2 | 1.9e-20 | 8 | 144 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpk..kvkaeekewyfFskrdkkyat..gkrknra..tksg 81
lppGfrF Ptdeel+ +yL++kv+g+ e+++vik +++y P ++ k +k++++ +yfF+ kk+ + +r +r+ t+ g
Potri.006G028300.1 8 LPPGFRFLPTDEELIRYYLHRKVHGRLtPEEADVIKLCNLYGEgarPPCEIFKlaGHKGGDDALYFFTILIKKTLNssTQRMSRTvgTDGG 98
79***********************984445577**99*9975344899996323556677899****999887752255777744578** PP
NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
+W+ g ++ +++ ++e +g+k+ + + ++++p+ ++ W++ ey
Potri.006G028300.1 99 TWHGDGVEEVICRLdNTEFKGTKRRFRYQNKQRPD-QHGCWTLLEYG 144
*******9988876577779********9777776.8999*****95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MQDILSRLPP GFRFLPTDEE LIRYYLHRKV HGRLTPEEAD VIKLCNLYGE GARPPCEIFK 60 LAGHKGGDDA LYFFTILIKK TLNSSTQRMS RTVGTDGGTW HGDGVEEVIC RLDNTEFKGT 120 KRRFRYQNKQ RPDQHGCWTL LEYGSESISE NVVICKLKIS DHGLKESRKR KSMDSSEVIQ 180 RTVNIDAVIN SGPTMAQSAH DQEPRLLIQN QEMLPLVGTV SNEDNGGFSA TGDTFYSIQN 240 MGLEAPAIGN IEPVLPFQPQ QANFIQEPTI GEHQQMASES FNEHPIISFE PIMLLSEESN 300 IIENQGIMGL ADISTEDYFE NAAANVNFET MTSANENQQM EPASYNGGER VCPAGDNAVT 360 PENAAPAVSA IPALEDDMLE TLMNDTYWLE NLQAMPREEE DS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC149484 | 0.0 | AC149484.1 Populus trichocarpa clone Pop1-69M19, complete sequence. |