PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G021000.1 | ||||||||
Common Name | POPTR_0006s02180g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22040.6 Da PI: 4.9876 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.2e-16 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+Wv+eIr+p+ + r++lg+f +e+Aa a++ a+++l+g Potri.006G021000.1 44 VFRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPNPEMAAVAYDVAALALKG 93 59****888.8*********94....468***********************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-29 | 44 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-9 | 44 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 44 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 44 | 103 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.997 | 44 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.26E-30 | 45 | 103 | No hit | No description |
PRINTS | PR00367 | 2.1E-10 | 83 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MQYYQQSNTS SADSSSSSGS SRTASAAAAA AGAIAPKVSG HHHVFRGVRR RSSGKWVSEI 60 REPKKPNRIW LGTFPNPEMA AVAYDVAALA LKGQDAELNF PNSAASLPVP ASTSPRDIQA 120 AAASAAAAIG AAKDALGIRS MGDTNQMEQE IRPMVNDQFV DEDLMFDMPN VLVNMAEAML 180 LSPPRLDIAG DDATAYDSTG DQNLWKFP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 38 | 103 | 8 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G021000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF155937 | 0.0 | EF155937.1 Populus trichocarpa TINY-like protein (TINYL18) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307914.1 | 1e-151 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 6e-52 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | B9HD63 | 1e-149 | B9HD63_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s02180.1 | 1e-150 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-36 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G021000.1 |
Entrez Gene | 7495637 |