PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G192900.1 | ||||||||
Common Name | POPTR_0005s21500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 315aa MW: 34754.2 Da PI: 6.1944 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.5 | 3.4e-14 | 232 | 286 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L ke ee +ke Potri.005G192900.1 232 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKEERTKERF 286 679***************************************9998877666654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-12 | 227 | 290 | No hit | No description |
SMART | SM00338 | 5.1E-10 | 230 | 294 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-12 | 232 | 289 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.978 | 232 | 284 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.23E-18 | 234 | 280 | No hit | No description |
SuperFamily | SSF57959 | 4.64E-9 | 234 | 285 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 237 | 252 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MASSKVMASS KPRNSDLSST TSSRSRRAIS SSLSATNTTE KLAHQSTDQL FQRESTMTVD 60 GILRNVYASP STESTLLGAQ ITLMETPNPP PPPPIETNGT DNQDMSVVIP QETKTADDIW 120 REIVAGRKEM KDEPDEMMTL EDFLAKAGAV DVVGEDGDDV KMPQPERLSG GLYAFDPVPP 180 SAFQVLDKVE GSIVGFGNGV EVELVAGSGG GGGGGRGKRG RTVVMEPLDK AAQQRQRRMI 240 KNRESAARSR ERKQAYQVEL ESLAVRLEEE NEQLLKEKEE RTKERFKQLM EKVIPVVEKR 300 RPRRVLRRVN SLQW* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.575 | 6e-48 | leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G192900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307500.1 | 0.0 | G-box-binding factor 4 isoform X2 | ||||
Swissprot | P42777 | 7e-58 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | B9H7S8 | 0.0 | B9H7S8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s21500.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 | Representative plant | OGRP8662 | 7 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-41 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G192900.1 |
Entrez Gene | 7492469 |