PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G182900.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 1952aa MW: 214843 Da PI: 8.0158

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G182900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	1827	1848	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++ +tG C+ G++Ck +H++ Potri.005G182900.1 1827 CPTYEATGSCPQGSKCKLHHPK 1848 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0076	1717	1745	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.178	1717	1746	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.6	1746	1770	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.174	1772	1798	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0051	1772	1797	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5	1799	1825	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.544	1821	1849	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.49	1826	1848	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1952 aa Download sequence Send to blast
MEYHKYDPNA RASRKSKDRT IATTAMTPPS SYFHYTKYAK HSSPTPSPRY PNNLNFHHHS 60 NFLEPPPPPQ TPPPPPSFPQ FSSRNPHFSY NPSPNHPQIH DNYNHQRSHH DLPHSTQLPW 120 VSHQLYDDRQ PPRRLPEFDH CVHEPRPDFT FLRDDHMQTR HELEGDPNPN SRLVQDRNVV 180 TDGESEHRRR RGEFGSNSDR SSSSVFRTVS NQLRGFKSNS GNYENRRRLN YDYHEKGSAN 240 QRWVHDREVM GESRDSLIEL GSNEIGDGEN RILAGKREHY RIRDGNLELE RNGGKRSREG 300 SYEFNRTPRK QLQKKSALLR LQKPSYRNRE DKRVHYSSYA DYTKSSPFRG KHQESGFLRG 360 KDKDKVLHAD RGMVEGARER SPVELDVSFK SNSLVAKAIL TPTLSSAGAS EMNLTPRNRK 420 VRKVLVPAKD MDSLNSSMHK LNKVALGLDE AASVANKTSS SNKELKKSKE VVTASGITNV 480 RDSSSLPMKR TVSLGSGTNL VSGKTSSLKG GKKKKVVKRV VKKVVNHKST LSSSQPTKTC 540 DEPVKADSFA YNPTEPIDPD KAATVADIVD PQPCPNEATA MPKNDKVERF DKFMESGLVG 600 AGADSGNLFV FNINGNKSRS ASPSGFSNHE ETKFGESFIN GDCDKGLHAI ADTENSLKKS 660 LDETFRSDIG GVEDVSKQPC QNGDSCLFED NAVSGSLKVL DYMEGNTDFG SLSSEKTIIH 720 EGPMNTCMPL MGLDTASMNS QERITVFDAG ASDVGCKEPC RNLGSPSAEN GITDLLQGAS 780 FPVVNNRSFS VSISGETGIQ NDVIRPNQGV GAILVSPSCC TNSEEINISV HGTGDDFSEQ 840 LSQDGVTKTL ESASIGGSLD TKVSAGGSDE DATDITKNDK KIEVPQLDLS RTDVSYMHLD 900 PANMVTSTTA HWVDKTLRLC FEDSATAECT FSGSQFVDVG SQSCNIVSVL HEGSLTDVSA 960 GRDSVRRSDD VGPSNVSPRN EKNRKFSAPQ LELNSPQESD ADEGTVFAEE EAVVSDMDFL 1020 CTSDFLPAQK RITASLENCS AGEHTVAAVK DAFEDDGQKD VKSHFAVEEL AVTKVTSRDL 1080 VVLGGKDIIN ATPVVVGSSN PNDSMDVDAG EGDKMDINAA EEQVVIDGGI DPCQIPSKLQ 1140 TQVLTEKLPR IDVEDSDFHG VKNNSPCMSN NLSSFEDGFG VSTINSSEEL MAFVPETLSD 1200 RGFPETLPDV LGTSLSKNPV EKVHGYHDKI LAERPAINVG SNSSICTTSS QSGKIVLKSD 1260 HAVEGDRLLA RRTGHFPSQD SKITTRTQNA VSGQLYGRKN QTNCAVSEIY PGRSSFVFTA 1320 SKSTASSSRN SKTQTWHRTD SSSDSAPPAK KAFSSTVHAQ MQFPRKTDKL QSTSYIRKGN 1380 SLVRKPISVA QSPDPHGLSS SVYQLNSSGT NEPKKSTGSD SRIDIVDPLD VVRKGGMNAS 1440 CERPKTPPLS SVPKIPNQAT NALGVRVSSP LAEHLHSLST ETATASAEFM ESNDVPKSSD 1500 NLLKISESPI TQNSQINNLE CNGDLNEDNK VVLANVKNLT YVKRKSNQLV ATSNPCASSV 1560 QNACNTSSSD SYYKRRRNQL IRTSLESQVK QTTSIPDESL NSEGQTALYS FFSGNFSKRR 1620 LRKGERIFRV GLVRYKMDSS KRTLQRISGD ESSCSGALQK EKDAKKSYVP RRLMIGKDEY 1680 VRIGNGNQLI RDPKKRTRIL ASEKVRWSLH TARSRLARKR KYCQFFSRFG KCNKDDGKCP 1740 FIHDSSKIAV CTKFLNGLCF NPECKLTHKV IPERMPDCSY FLQGLCTNKD CPYRHVRVNP 1800 NASICEGFLR GYCADVNECL KKHSYVCPTY EATGSCPQGS KCKLHHPKNR SKEKKSKRSR 1860 DNNAQGRYFG LMHASTTELR NPVPGKLNVL DNDAISFKGS IADYISLDVI DEVVENTIPA 1920 DEHTALGDSD PLELQLGDLD ELIKPVRIMN I*

Sequence ? help Back to Top

Protein Sequence Length: 1952 aa Download sequence Send to blast

MEYHKYDPNA RASRKSKDRT IATTAMTPPS SYFHYTKYAK HSSPTPSPRY PNNLNFHHHS  60
NFLEPPPPPQ TPPPPPSFPQ FSSRNPHFSY NPSPNHPQIH DNYNHQRSHH DLPHSTQLPW  120
VSHQLYDDRQ PPRRLPEFDH CVHEPRPDFT FLRDDHMQTR HELEGDPNPN SRLVQDRNVV  180
TDGESEHRRR RGEFGSNSDR SSSSVFRTVS NQLRGFKSNS GNYENRRRLN YDYHEKGSAN  240
QRWVHDREVM GESRDSLIEL GSNEIGDGEN RILAGKREHY RIRDGNLELE RNGGKRSREG  300
SYEFNRTPRK QLQKKSALLR LQKPSYRNRE DKRVHYSSYA DYTKSSPFRG KHQESGFLRG  360
KDKDKVLHAD RGMVEGARER SPVELDVSFK SNSLVAKAIL TPTLSSAGAS EMNLTPRNRK  420
VRKVLVPAKD MDSLNSSMHK LNKVALGLDE AASVANKTSS SNKELKKSKE VVTASGITNV  480
RDSSSLPMKR TVSLGSGTNL VSGKTSSLKG GKKKKVVKRV VKKVVNHKST LSSSQPTKTC  540
DEPVKADSFA YNPTEPIDPD KAATVADIVD PQPCPNEATA MPKNDKVERF DKFMESGLVG  600
AGADSGNLFV FNINGNKSRS ASPSGFSNHE ETKFGESFIN GDCDKGLHAI ADTENSLKKS  660
LDETFRSDIG GVEDVSKQPC QNGDSCLFED NAVSGSLKVL DYMEGNTDFG SLSSEKTIIH  720
EGPMNTCMPL MGLDTASMNS QERITVFDAG ASDVGCKEPC RNLGSPSAEN GITDLLQGAS  780
FPVVNNRSFS VSISGETGIQ NDVIRPNQGV GAILVSPSCC TNSEEINISV HGTGDDFSEQ  840
LSQDGVTKTL ESASIGGSLD TKVSAGGSDE DATDITKNDK KIEVPQLDLS RTDVSYMHLD  900
PANMVTSTTA HWVDKTLRLC FEDSATAECT FSGSQFVDVG SQSCNIVSVL HEGSLTDVSA  960
GRDSVRRSDD VGPSNVSPRN EKNRKFSAPQ LELNSPQESD ADEGTVFAEE EAVVSDMDFL  1020
CTSDFLPAQK RITASLENCS AGEHTVAAVK DAFEDDGQKD VKSHFAVEEL AVTKVTSRDL  1080
VVLGGKDIIN ATPVVVGSSN PNDSMDVDAG EGDKMDINAA EEQVVIDGGI DPCQIPSKLQ  1140
TQVLTEKLPR IDVEDSDFHG VKNNSPCMSN NLSSFEDGFG VSTINSSEEL MAFVPETLSD  1200
RGFPETLPDV LGTSLSKNPV EKVHGYHDKI LAERPAINVG SNSSICTTSS QSGKIVLKSD  1260
HAVEGDRLLA RRTGHFPSQD SKITTRTQNA VSGQLYGRKN QTNCAVSEIY PGRSSFVFTA  1320
SKSTASSSRN SKTQTWHRTD SSSDSAPPAK KAFSSTVHAQ MQFPRKTDKL QSTSYIRKGN  1380
SLVRKPISVA QSPDPHGLSS SVYQLNSSGT NEPKKSTGSD SRIDIVDPLD VVRKGGMNAS  1440
CERPKTPPLS SVPKIPNQAT NALGVRVSSP LAEHLHSLST ETATASAEFM ESNDVPKSSD  1500
NLLKISESPI TQNSQINNLE CNGDLNEDNK VVLANVKNLT YVKRKSNQLV ATSNPCASSV  1560
QNACNTSSSD SYYKRRRNQL IRTSLESQVK QTTSIPDESL NSEGQTALYS FFSGNFSKRR  1620
LRKGERIFRV GLVRYKMDSS KRTLQRISGD ESSCSGALQK EKDAKKSYVP RRLMIGKDEY  1680
VRIGNGNQLI RDPKKRTRIL ASEKVRWSLH TARSRLARKR KYCQFFSRFG KCNKDDGKCP  1740
FIHDSSKIAV CTKFLNGLCF NPECKLTHKV IPERMPDCSY FLQGLCTNKD CPYRHVRVNP  1800
NASICEGFLR GYCADVNECL KKHSYVCPTY EATGSCPQGS KCKLHHPKNR SKEKKSKRSR  1860
DNNAQGRYFG LMHASTTELR NPVPGKLNVL DNDAISFKGS IADYISLDVI DEVVENTIPA  1920
DEHTALGDSD PLELQLGDLD ELIKPVRIMN I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	2e-18	1723	1848	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	2e-18	1723	1848	41	168	Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G182900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457106.1	0.0	uncharacterized protein LOC18099604 isoform X1
Refseq	XP_024457107.1	0.0	uncharacterized protein LOC18099604 isoform X2
TrEMBL	A0A385JI13	0.0	A0A385JI13_POPTO; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRING	POPTR_0005s20550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6103	10	10
Representative plant	OGRP4573	5	5

Link Out ? help Back to Top
Phytozome	Potri.005G182900.1