PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G164100.1 | ||||||||
Common Name | POPTR_0005s17160g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1159aa MW: 127818 Da PI: 4.7036 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 533 | 556 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C+ +F +++L +H+ + H Potri.005G164100.1 533 YECHKCTLTFDGQDDLLQHLLSsH 556 99******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02178 | 0.11 | 193 | 203 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 0.54 | 193 | 205 | IPR017956 | AT hook, DNA-binding motif |
Pfam | PF02178 | 0.11 | 301 | 311 | IPR017956 | AT hook, DNA-binding motif |
SMART | SM00384 | 0.54 | 301 | 313 | IPR017956 | AT hook, DNA-binding motif |
PROSITE profile | PS50982 | 10.618 | 407 | 480 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 2.75E-8 | 414 | 486 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 1.4E-5 | 416 | 474 | IPR001739 | Methyl-CpG DNA binding |
Gene3D | G3DSA:3.30.890.10 | 2.6E-6 | 416 | 500 | IPR001739 | Methyl-CpG DNA binding |
PROSITE profile | PS50157 | 8.974 | 533 | 561 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 535 | 556 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1159 aa Download sequence Send to blast |
MATATVDSSV CNYQNQVHTE SLLLIDLRHL SQPELLSLSF CSSSSSLHRL QTDTADVSTP 60 KIDRSVFNES AGSRKQTFSR LRLAPRNNNA SSSSNSTPVV PYQITERHPL DEENSQIIYL 120 LKSLFGSDSH FIENNNENNH NLVSVPVIYN EYMRLPCTNN AELQNVGFSQ GGVKSLEVNH 180 LISTRIAESS SKKRKRGRPR KNENVDFGYN ELEERKKIEN KTIAVVCDDV EVQNKKKEEM 240 EMVGKNGVAV DFVALGNMED PYGEELRRRT EGMLGFSQGG VKSLEVNHLI STRIAESSSK 300 KRKRGRPRKN ENVDFGNNEL VERGKIENKT IVVVCDDVEV QNKKKEEMEM VSKNGVVVDF 360 VALGNMEDPY GEELRRRTEG MQLKAEFLGF LEGFEGEWGS TRKKRRIVDA SLFGDALPIG 420 WKLSICVKKQ AGRVWLACTR YISPNGLQFV SCKEVSSYLL SFSGLHDVRR SNFDHMDGRI 480 KLTDKIATSI SADQTCKDGK NENDFISYKA LPVTSTSTET GGCPREVQTG MNYECHKCTL 540 TFDGQDDLLQ HLLSSHQRSP KQLKCGTSTN EEYCTNIIDD LDCSVAGDVR NLACINLNRV 600 PPRLIEELNQ GRGSDSGLLA PNAKENMFND DIIEDRNCSS TIDNMVIDDW DADGKGEPIT 660 GSCAAIAENV AANLKEQRSS EGCSVGLLNS IAVEIMQEKS SKGDLTGIEN NMNSVCTGML 720 NESKFDDVGK PGTNELTSVC RDNNTALVDD NVVINEQGKN HGGCPVIPFL NEQMHLAENN 780 ITGTPKCTIR EPCQEEESEG GLLTISGNEQ SFDLKGNVIK VSKGTINVVN HNEVLCLKNN 840 EFGSEIDQSV QTLTNIQERS SNIFSFFPST NGLTFASKDE QSHDDENSMN QLSCTTSAED 900 KLQEAKTSCN GELCIAFGDN CTEQDADIVT GTVQEICFLF AGNQHTLTAK DNATGPFNGT 960 MDELKQKMDS VESVLCLSGD APMRSVEKNL HTAFTGSIQE EPRVKNTENS KKDDLGHDFS 1020 GHPGPNESVE SEFVWRNEEN GGLRCDFADT CQPVQASGFF PLYDAVSDKG ESEHFGEAYG 1080 VISGFEGLKS GGMENMEYNL LTSQGDLPFL PKNASRHHVP AVCVWCGREI CQEAFESEAQ 1140 TSTMGFMCAE CAARFSGQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G164100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456910.1 | 0.0 | uncharacterized protein LOC7486594 isoform X2 | ||||
TrEMBL | A0A3N7F4P1 | 0.0 | A0A3N7F4P1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s17160.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5810 | 17 | 19 | Representative plant | OGRP2035 | 7 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G164100.1 |
Entrez Gene | 7486594 |