PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G122200.2 | ||||||||
Common Name | POPTR_0005s12390g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9613.64 Da PI: 9.12 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W+ +a+ +g g++++++ ++ Potri.005G122200.2 15 SWTPKQNKLFEKALALYDKDtpdRWHNVAKAVG-GKSAEEVERHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.389 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-8 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-5 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-7 | 15 | 58 | No hit | No description |
SuperFamily | SSF46689 | 1.09E-12 | 15 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MASNSLNSSR NCSSSWTPKQ NKLFEKALAL YDKDTPDRWH NVAKAVGGKS AEEVERHYEI 60 LIKDVREIES GRVPFPNYRS SGNSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-33 | 6 | 82 | 1 | 77 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G122200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383186.1 | 8e-58 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 9e-37 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | B9MXN3 | 2e-56 | B9MXN3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12390.1 | 3e-57 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-35 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G122200.2 |
Entrez Gene | 18099269 |