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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.005G116800.3 |
Common Name | POPTR_0005s11870g, PtVNS02 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
NAC |
Protein Properties |
Length: 343aa MW: 39374.9 Da PI: 4.9073 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G116800.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177.6 | 3.4e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
Potri.005G116800.3 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 98
69****************************.9***************954543344678******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk+v++ k++l+g++ktLvfykgrap+g+kt+W+mheyrle
Potri.005G116800.3 99 DKAVYD-KTKLIGMRKTLVFYKGRAPNGQKTHWIMHEYRLE 138
******.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MMESMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IRDIDLYRIE PWDLQERCWI 60 GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKTKLIG MRKTLVFYKG 120 RAPNGQKTHW IMHEYRLESD ENGPPQEEGW VVCRAFKKRT TGQTKSIEGW DSSYFYEESS 180 GVSSVVDPID YIARQPQGFL AHNFLCKQEI EGDNLSFMHS ENFVQLPQLK SPSEPLIKRP 240 TSSMSLISEN NNSNNEEVEQ NGLSNNNTQK VTDWRALDKF VASQLSQEER YDGDGVSSFV 300 EAENNSDLPF LLLQSGRDDG NKFNGFLGSS SDCDIGICIF EK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-50 | 9 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 9 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 9 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 9 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-50 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 9 | 163 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 9 | 163 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Uniprot | TISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB599933 | 0.0 | AB599933.1 Populus trichocarpa PtVNS02 mRNA for transcription factor, complete cds. |